Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,974,541	T→C	T262A (ACC→GCC)	cheA ←	chemotaxis protein CheA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,974,541	0	T	C	96.8%	209.6 / ‑2.1	63	T262A (ACC→GCC)	cheA	chemotaxis protein CheA
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (37/24); total (38/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

TTATCAAATCACCATGATTAACCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGTGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGATCGGCTTC  >  NC_000913/1974412‑1974676

ttATCAAATCACCATGATTAACCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATtg                                                                                                                               >  2:1180216/1‑140 (MQ=255)

       aTCACCATGATTAACCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGcgcg                                                                                                                        <  1:214345/140‑1 (MQ=255)

         cACCATGATTAACCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGcgtc                                                                                                                      >  2:1150620/1‑140 (MQ=255)

         cACCATGATTAACCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGcgtc                                                                                                                      >  2:348993/1‑140 (MQ=255)

              tGATTAACCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGtttt                                                                                                                 >  2:643475/1‑140 (MQ=255)

                 ttAACCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTc                                                                                                              >  2:769956/1‑140 (MQ=255)

                   aaCCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTccc                                                                                                            >  2:326631/1‑140 (MQ=255)

                   aaCCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTccc                                                                                                            >  1:83687/1‑140 (MQ=255)

                    aCCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTcc                                                                                                             <  2:306438/138‑1 (MQ=255)

                    aCCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTcc                                                                                                             >  1:306438/1‑138 (MQ=255)

                    aCCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCg                                                                                                           <  2:449080/140‑1 (MQ=255)

                     ccGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGc                                                                                                          >  1:765067/1‑140 (MQ=255)

                        ggTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTcc                                                                                                       >  2:1005556/1‑140 (MQ=255)

                         gTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCa                                                                                                      >  1:93856/1‑140 (MQ=255)

                          tCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCAc                                                                                                     >  2:475511/1‑140 (MQ=255)

                               ttCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGc                                                                                                >  2:328207/1‑140 (MQ=255)

                               ttCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGc                                                                                                <  1:328207/140‑1 (MQ=255)

                               ttCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGc                                                                                                <  1:1180216/140‑1 (MQ=255)

                                   cTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGt                                                                                            >  1:177311/1‑140 (MQ=255)

                                   cTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGt                                                                                            >  1:9114/1‑140 (MQ=255)

                                         cGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGgcgc                                                                                      >  2:717358/1‑140 (MQ=255)

                                                cAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGt                                                                                            <  1:49902/127‑1 (MQ=255)

                                                cAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGt                                                                                            >  2:49902/1‑127 (MQ=255)

                                                    cATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTg                                                                           <  2:177311/140‑1 (MQ=255)

                                                        gACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAg                                                                       >  1:1181888/1‑140 (MQ=255)

                                                             ggTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGttt                                                                    >  1:1058378/1‑138 (MQ=255)

                                                             ggTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGttt                                                                    <  2:1058378/138‑1 (MQ=255)

                                                             ggTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTaa                                                                  >  1:721181/1‑140 (MQ=255)

                                                             ggTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTa                                                                   >  2:717977/1‑139 (MQ=255)

                                                             ggTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTa                                                                   <  1:717977/139‑1 (MQ=255)

                                                              gTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAg                                                                 <  2:899629/140‑1 (MQ=255)

                                                                gATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCa                                                               <  1:769956/140‑1 (MQ=255)

                                                                     ccAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACtggt                                                          <  2:765067/140‑1 (MQ=255)

                                                                      cAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACtggtg                                                         <  2:93856/140‑1 (MQ=255)

                                                                           cGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTggtggggtg                                                    <  1:348993/140‑1 (MQ=255)

                                                                                       taattaatTGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGc                                        <  1:475511/140‑1 (MQ=255)

                                                                                         attaattGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCga                                      <  2:187286/140‑1 (MQ=255)

                                                                                               tGATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTc                                >  2:126464/1‑140 (MQ=255)

                                                                                                gATCAACCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCt                               >  1:604531/1‑140 (MQ=255)

                                                                                                    aaCCTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTg                           >  2:119150/1‑140 (MQ=255)

                                                                                                      ccTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGtt                         >  2:256124/1‑140 (MQ=255)

                                                                                                       cTTTTCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGttt                        <  1:1005556/140‑1 (MQ=255)

                                                                                                          ttCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCaa                     <  2:1181888/140‑1 (MQ=255)

                                                                                                           tCTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCaaa                    >  1:1113002/1‑140 (MQ=255)

                                                                                                            cTACCGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAg                   <  1:119150/140‑1 (MQ=255)

                                                                                                                cGCTACACGGATGCTGGTGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGttt                        <  1:1002721/131‑1 (MQ=255)

                                                                                                                cGCTACACGGATGCTGGTGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGttt                        >  2:1002721/1‑131 (MQ=255)

                                                                                                                cGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTaa               >  1:960474/1‑140 (MQ=255)

                                                                                                                cGCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTaa               >  1:288937/1‑140 (MQ=255)

                                                                                                                 gCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAAt              >  2:383661/1‑140 (MQ=255)

                                                                                                                 gCTACACGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAAt              >  2:1097179/1‑140 (MQ=255)

                                                                                                                    acacGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTg           >  1:667687/1‑140 (MQ=255)

                                                                                                                     cacGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGa          <  2:721181/140‑1 (MQ=255)

                                                                                                                      acGGATGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGAt         <  2:288937/140‑1 (MQ=255)

                                                                                                                          aTGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGTGAGACTTCTACTGTTTCAAAGGTAATCTGATCGGc     >  2:335316/1‑140 (MQ=255)

                                                                                                                          aTGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGa          >  1:817194/1‑135 (MQ=255)

                                                                                                                          aTGCTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGa          <  2:817194/135‑1 (MQ=255)

                                                                                                                             cTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGAt         <  2:628588/133‑1 (MQ=255)

                                                                                                                             cTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGAt         >  1:628588/1‑133 (MQ=255)

                                                                                                                             cTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGATCGGCTTc  <  2:415191/140‑1 (MQ=255)

                                                                                                                             cTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGATCGGCTTc  >  2:545217/1‑140 (MQ=255)

                                                                                                                             cTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGATCGGCTTc  >  1:415191/1‑140 (MQ=255)

                                                                                                                             cTGGCGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGATCGGCTTc  >  2:933439/1‑140 (MQ=255)

TTATCAAATCACCATGATTAACCGGGTCCAGTTCGCTGGAACGCTGGGCAAGCATGGACTGGGTGATAACCAGCTCGCCGACGAGGTTAATTAATTGATCAACCTTTTCTACCGCTACACGGATGCTGGTGGATTCATTGCTGCGCGTCGTTTTTTCCCGCTCCACGCGGCCGGTTGGCGCTTGTTCGGCTGCCAGTTTAAGCACTGGTGGGGTGGATATTTTTGGCGAGACTTCTACTGTTTCAAAGGTAATCTGATCGGCTTC  >  NC_000913/1974412‑1974676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A