Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 228 65.7 2434974 91.7% 2232871 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,981,526 (C)5→4 coding (87/1425 nt) otsA ← trehalose‑6‑phosphate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,981,5220C.100.0% 252.3 / NA 60coding (91/1425 nt)otsAtrehalose‑6‑phosphate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (25/35);  total (25/35)

GTATTCGTCAAGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTGCCCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGC  >  NC_000913/1981385‑1981652
                                                                                                                                         |                                                                                                                                  
gtaTTCGTCAAGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTGccc                                                                                                                                  <  1:503333/140‑1 (MQ=255)
gtaTTCGTCAAGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTGccc                                                                                                                                  <  1:110833/140‑1 (MQ=255)
    tCGTCAAGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTGccccagt                                                                                                                              <  1:557926/140‑4 (MQ=255)
    tCGTCAAGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTGccccagt                                                                                                                              >  1:971492/1‑137 (MQ=255)
        cAAGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGc                                                                                                                         >  2:681439/1‑140 (MQ=255)
        cAAGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGc                                                                                                                         >  2:935622/1‑140 (MQ=255)
         aaGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGcc                                                                                                                        <  1:347820/140‑1 (MQ=255)
           ggTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCaa                                                                                                                      >  2:181478/1‑140 (MQ=255)
               cTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGc                                                                                                                  >  1:635750/1‑140 (MQ=255)
               cTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGc                                                                                                                  >  1:582933/1‑140 (MQ=255)
                tGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCa                                                                                                                 <  1:181478/140‑1 (MQ=255)
                  ttCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAg                                                                                                               <  1:11653/140‑1 (MQ=255)
                        gAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCAcc                                                                                                         <  1:1010316/140‑1 (MQ=255)
                          ggTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCgg                                                                                                       <  2:790537/140‑1 (MQ=255)
                              aaaaGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACt                                                                                                   <  2:582933/140‑1 (MQ=255)
                                  gagGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTggcg                                                                                               <  1:1018835/140‑1 (MQ=255)
                                     gCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGgcggcg                                                                                            >  1:158737/1‑140 (MQ=255)
                                       ccACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTg                                                                                          <  2:988999/140‑1 (MQ=255)
                                          cGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTc                                                                                       >  2:584287/1‑140 (MQ=255)
                                            tAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGACGGCGTGCTCGt                                                                                     <  2:1142751/140‑1 (MQ=255)
                                                gTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCtgg                                                                                 >  1:685270/1‑140 (MQ=255)
                                                  tACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCtggtg                                                                               <  1:656296/140‑1 (MQ=255)
                                                   aCCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCtggtgg                                                                              >  2:783921/1‑140 (MQ=255)
                                                    ccTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTggtggt                                                                             >  1:222734/1‑140 (MQ=255)
                                                    ccTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTggtggt                                                                             <  2:158737/140‑1 (MQ=255)
                                                    ccTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTggtggt                                                                             >  2:61538/1‑140 (MQ=255)
                                                     cTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTggtggta                                                                            <  2:1088063/140‑2 (MQ=255)
                                                     cTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGgtggtg                                                                            <  2:250346/140‑1 (MQ=255)
                                                          ttCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATc                                                                       <  2:592427/140‑1 (MQ=255)
                                                                  ttttAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGa                                                               <  1:935622/140‑1 (MQ=255)
                                                                  ttttAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGa                                                               <  1:681439/140‑1 (MQ=255)
                                                                     tAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGAtac                                                            <  2:133/140‑1 (MQ=255)
                                                                               tCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTaaa                                                  <  2:635750/140‑1 (MQ=255)
                                                                               tCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTaaa                                                  <  2:971492/140‑1 (MQ=255)
                                                                                    aTTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGa                                                               >  1:910575/1‑122 (MQ=255)
                                                                                    aTTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGa                                                               <  2:910575/122‑1 (MQ=255)
                                                                                    aTTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGAtac                                                            <  2:487200/125‑1 (MQ=255)
                                                                                    aTTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGAtac                                                            >  1:487200/1‑125 (MQ=255)
                                                                                     ttCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTc                                            <  1:1205633/140‑1 (MQ=255)
                                                                                        ccTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATa                                         >  1:1102137/1‑140 (MQ=255)
                                                                                        ccTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATa                                         >  2:452707/1‑140 (MQ=255)
                                                                                        ccTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATa                                         >  2:368874/1‑140 (MQ=255)
                                                                                          tGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGt                                       >  2:208884/1‑140 (MQ=255)
                                                                                          tGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGt                                       <  2:66711/140‑1 (MQ=255)
                                                                                             ttCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAAc                                                 >  1:135637/1‑127 (MQ=255)
                                                                                             ttCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAAc                                                 <  2:135637/127‑1 (MQ=255)
                                                                                             ttCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGCCTCATAGtcat                                    <  2:222734/140‑1 (MQ=255)
                                                                                             ttCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGtcat                                    <  1:452707/140‑1 (MQ=255)
                                                                                              tCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGtcatc                                   <  1:584287/140‑1 (MQ=255)
                                                                                              tCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGtcatc                                   <  2:685270/140‑1 (MQ=255)
                                                                                              tCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGt                                       >  1:221367/1‑136 (MQ=255)
                                                                                              tCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGt                                       <  2:221367/136‑1 (MQ=255)
                                                                                               caccacTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGtcatca                                  <  1:368874/140‑1 (MQ=255)
                                                                                                  cacTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTc                               >  2:614811/1‑140 (MQ=255)
                                                                                                   acTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTcc                              >  1:327635/1‑140 (MQ=255)
                                                                                                           cAAACCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTAttt                      >  1:71040/1‑140 (MQ=255)
                                                                                                            aaaCCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGtcat                                    >  1:799000/1‑125 (MQ=255)
                                                                                                            aaaCCACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGtcat                                    <  2:799000/125‑1 (MQ=255)
                                                                                                               ccACAGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTtctc                  >  2:959128/1‑140 (MQ=255)
                                                                                                                   aGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCtttt              <  2:508184/140‑1 (MQ=255)
                                                                                                                   aGTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCtttt              <  1:614811/140‑1 (MQ=255)
                                                                                                                    gTCCGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCttttt             <  2:549232/140‑1 (MQ=255)
                                                                                                                       cGCCTGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTttgt          >  2:838698/1‑140 (MQ=255)
                                                                                                                           tGCGGCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTa      <  1:61538/140‑1 (MQ=255)
                                                                                                                               gCTTTCAGTG‑CCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGc  <  1:783921/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
GTATTCGTCAAGGTCCTGTTCGCTGAGGTTAAAAGAGGCCCACGTAATGTTACCTTTTTTCACCTTTTTTAGCGGCTGATCCTCATTCCCTGTTTCACCACTCCAGCCAAACCACAGTCCGCCTGCGGCTTTCAGTGCCCCCAGTATGCCAACGGCAAGGCCACCGGCACTGGCGGCGTGCTCGTCTGGTGGTGCAATCCGGTTAGATACTACGACTAAACGACTCATAGTCATCACTCCTGTTATTTTCTCTTTTTTGTTGTAATGC  >  NC_000913/1981385‑1981652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A