Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,196,870	T→C	L133L (TTA→CTA)	yehF →	putative protein YehF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,196,870	0	T	C	100.0%	278.4 / NA	78	L133L (TTA→CTA)	yehF	putative protein YehF
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (44/34); total (44/34)

TTATCCACCATTATTCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGTTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTTAGAATG  >  NC_000913/2196735‑2197006

ttATCCACCATTATTCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAg                                                                                                                                      >  2:40218/1‑140 (MQ=255)

         attattCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATcgccg                                                                                                                             <  1:111388/140‑1 (MQ=255)

         attattCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATcgccg                                                                                                                             <  2:815056/140‑1 (MQ=255)

          ttattCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATcgccg                                                                                                                             <  1:389620/139‑1 (MQ=255)

          ttattCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATcgccg                                                                                                                             >  2:389620/1‑139 (MQ=255)

             ttCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCttt                                                                                                                         >  1:612492/1‑140 (MQ=255)

             ttCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCttt                                                                                                                         >  2:313822/1‑140 (MQ=255)

              tCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTc                                                                                                                        >  1:770313/1‑140 (MQ=255)

                aGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTccc                                                                                                                      >  2:466902/1‑140 (MQ=255)

                aGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTccc                                                                                                                      >  2:77594/1‑140 (MQ=255)

                 ggAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCg                                                                                                                     >  1:910069/1‑140 (MQ=255)

                     caacCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGt                                                                                                                 >  2:968653/1‑140 (MQ=255)

                       acCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTc                                                                                                               >  1:51295/1‑140 (MQ=255)

                            ctTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGtt                                                                                                          >  1:1196568/1‑140 (MQ=255)

                             tttCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCt                                                                                                                           >  2:459443/1‑122 (MQ=255)

                             tttCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCt                                                                                                                           <  1:459443/122‑1 (MQ=255)

                             tttCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTc                                                                                                         <  1:466902/140‑1 (MQ=255)

                                cGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCagc                                                                                                      <  2:770313/140‑1 (MQ=255)

                                  tAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCagcaa                                                                                                    >  2:40313/1‑140 (MQ=255)

                                            ccGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAAt                                                                                          <  2:49763/140‑1 (MQ=255)

                                             cGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTAGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATGGCCGCTTACCCGGTGTTCCTGTTCAGCAAGCAGAGAAAtt                                                                                         >  2:1075252/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACaaa                                                                                           <  2:501636/136‑1 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACaaa                                                                                           >  1:501636/1‑136 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       >  2:519786/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       >  1:949018/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       >  1:476996/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       >  1:41965/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       >  2:1132933/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       >  1:1108512/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       >  2:175671/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       >  2:193275/1‑140 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       <  2:476996/140‑1 (MQ=255)

                                               tGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGc                                                                                       <  2:41965/140‑1 (MQ=255)

                                                  gcCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGcccc                                                                                    >  2:134853/1‑140 (MQ=255)

                                                      gACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAAtt                                                                                >  1:680658/1‑140 (MQ=255)

                                                       aCAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTa                                                                               >  2:782780/1‑140 (MQ=255)

                                                        cAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTAc                                                                              <  2:612492/140‑1 (MQ=255)

                                                             aTACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGc                                                                         <  1:1075252/140‑1 (MQ=255)

                                                             aTACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGc                                                                         <  1:519786/140‑1 (MQ=255)

                                                             aTACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGc                                                                         <  1:134853/140‑1 (MQ=255)

                                                             aTACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGc                                                                         <  1:40313/140‑1 (MQ=255)

                                                             aTACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGc                                                                         <  2:312106/140‑1 (MQ=255)

                                                               aCAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCtt                                                                       <  2:772157/140‑1 (MQ=255)

                                                               aCAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCtt                                                                       <  2:967263/140‑1 (MQ=255)

                                                               aCAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCtt                                                                       <  2:910069/140‑1 (MQ=255)

                                                                 aGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCt                                                                        >  1:398067/1‑137 (MQ=255)

                                                                 aGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCt                                                                        <  2:398067/137‑1 (MQ=255)

                                                                 aGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAg                                                                     >  2:49592/1‑140 (MQ=255)

                                                                     gCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTg                                                                 <  1:839698/140‑1 (MQ=255)

                                                                      cTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGt                                                                >  1:285185/1‑140 (MQ=255)

                                                                      cTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGt                                                                >  1:430209/1‑140 (MQ=255)

                                                                       tGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTa                                                               <  2:51295/140‑1 (MQ=255)

                                                                       tGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTa                                                               <  1:296834/140‑1 (MQ=255)

                                                                       tGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTa                                                               <  2:1196568/140‑1 (MQ=255)

                                                                       tGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTa                                                               <  1:1044478/140‑1 (MQ=255)

                                                                        gTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAg                                                              >  2:1191556/1‑140 (MQ=255)

                                                                          tttACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAgtg                                                            >  2:1215175/1‑140 (MQ=255)

                                                                                gTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGc                                                      <  1:313822/140‑1 (MQ=255)

                                                                                 tggctggcGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCa                                                     >  2:976660/1‑140 (MQ=255)

                                                                                 tggctggcGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCa                                                     >  2:302915/1‑140 (MQ=255)

                                                                                 tggctggcGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCa                                                     >  1:917994/1‑140 (MQ=255)

                                                                                 tggctggcGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCa                                                     >  1:371783/1‑140 (MQ=255)

                                                                                  ggctggcGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCaa                                                    <  2:637268/140‑1 (MQ=255)

                                                                                  ggctggcGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCaa                                                    <  1:302915/140‑1 (MQ=255)

                                                                                     tggcGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACgg                                                 <  1:1215175/140‑1 (MQ=255)

                                                                                       gcGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGa                                               <  1:888463/140‑1 (MQ=255)

                                                                                        cGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGat                                              >  2:1005118/1‑140 (MQ=255)

                                                                                              atatTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATaaa                                        <  1:77594/140‑1 (MQ=255)

                                                                                                       tCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCcaca                               >  1:887615/1‑140 (MQ=255)

                                                                                                       tCGTTTTTCCGCCCGAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCcaca                               >  2:854484/1‑140 (MQ=255)

                                                                                                                     gAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAgcgc                 <  1:1077257/140‑1 (MQ=255)

                                                                                                                     gAAGTTGTACACACCACGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAgcgc                 <  1:175671/140‑1 (MQ=255)

                                                                                                                                  ccacGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTTAGaa    <  1:193275/140‑1 (MQ=255)

                                                                                                                                   cacGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTTAGAAt   >  2:934834/1‑140 (MQ=255)

                                                                                                                                   cacGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTTAGAAt   >  1:805769/1‑140 (MQ=255)

                                                                                                                                   cacGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTTAGAAt   >  1:1138681/1‑140 (MQ=255)

                                                                                                                                   cacGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTTAGAAt   >  2:1214745/1‑140 (MQ=255)

                                                                                                                                   cacGCTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAAT‑AAACAGCCACATTTGACTTCAGCGCCTGTTCTTTAGAATg  >  1:241275/1‑140 (MQ=255)

TTATCCACCATTATTCAGGAACAACCCTCTTTCGTAGCAGAAACCCGTGCGCCTGACAAAAATACAGATGCTGTTTTACCGTGGCTGGCGAAAGATATTGCTGTCGTTTTTCCGCCCGAAGTTGTACACACCACGTTAAGTCATCGCCGCTTTCCCGGAGTTCCTGTTCAGCAAGCAGACAAATTGCCCCAATTACGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTTAGAATG  >  NC_000913/2196735‑2197006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A