Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 228 65.7 2434974 91.7% 2232871 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,481,025 T→C L384L (TTA→TTG)  emrY ← tripartite efflux pump membrane subunit EmrY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,481,0250TC100.0% 280.8 / NA 79L384L (TTA→TTG) emrYtripartite efflux pump membrane subunit EmrY
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/36);  total (43/36)

ATTCGCGTCGTCCCCACAGCGTCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGTAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAACTAAATGTCACTAAC  >  NC_000913/2480889‑2481160
                                                                                                                                        |                                                                                                                                       
aTTCGCGTCGTCCCCACAGCGTCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCaaa                                                                                                                                      <  2:99524/140‑1 (MQ=255)
   cgcgTCGTCCCCACAGCGTCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAg                                                                                                                                   >  2:743734/1‑140 (MQ=255)
   cgcgTCGTCCCCACAGCGTCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAg                                                                                                                                   <  2:289957/140‑1 (MQ=255)
         gtcCCCACAGCGTCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAg                                                                                                                             >  1:4320/1‑140 (MQ=255)
               acaGCGTCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACg                                                                                                                       >  2:1136581/1‑140 (MQ=255)
                   cGTCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGa                                                                                                                   >  2:936568/1‑140 (MQ=255)
                     tCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGACGAAt                                                                                                                 >  2:244493/1‑140 (MQ=255)
                      cATTGTCAACGACGTATCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATc                                                                                                                >  1:220915/1‑140 (MQ=255)
                      cATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATc                                                                                                                <  2:468868/140‑1 (MQ=255)
                           tCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGa                                                                                                           <  1:743734/140‑1 (MQ=255)
                              acgacgTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGaaaa                                                                                                        >  2:1043061/1‑140 (MQ=255)
                                  cgTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACt                                                                                                    >  2:867395/1‑140 (MQ=255)
                                   gTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTg                                                                                                   <  1:1068001/140‑1 (MQ=255)
                                     aCCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCg                                                                                                 >  1:747762/1‑140 (MQ=255)
                                     aCCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCg                                                                                                 >  1:360168/1‑140 (MQ=255)
                                     aCCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCg                                                                                                 >  1:363652/1‑140 (MQ=255)
                                     aCCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCg                                                                                                 >  2:156597/1‑140 (MQ=255)
                                           tGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCaaaa                                                                                           <  1:156597/140‑1 (MQ=255)
                                            gATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAat                                                                                          <  1:67327/140‑1 (MQ=255)
                                               ccTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAatgat                                                                                       <  1:867395/140‑1 (MQ=255)
                                               ccTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAatgat                                                                                       >  1:991086/1‑140 (MQ=255)
                                               ccTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAatgat                                                                                       <  2:737878/140‑1 (MQ=255)
                                               ccTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAatga                                                                                        <  1:734511/139‑1 (MQ=255)
                                               ccTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAatga                                                                                        >  2:734511/1‑139 (MQ=255)
                                                   gcAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCt                                                                                   >  2:430756/2‑140 (MQ=255)
                                                   aCAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCt                                                                                   >  1:1031882/1‑140 (MQ=255)
                                                   aCAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCt                                                                                   <  2:266806/140‑1 (MQ=255)
                                                   aCAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCt                                                                                   >  2:512860/1‑140 (MQ=255)
                                                    cAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAatgat                                                                                       <  2:1204911/135‑1 (MQ=255)
                                                    cAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAatgat                                                                                       >  1:1204911/1‑135 (MQ=255)
                                                     aaGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGt                                                                                 >  2:237541/1‑140 (MQ=255)
                                                       ggTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGTGGAAAAATGATGCCTGTaa                                                                               >  2:638176/1‑140 (MQ=255)
                                                        gTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAACCTGAAAACGAAATCGTTGTTACGGGCAAAAAGAAACAGGCAACGGAGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTaaa                                                                              >  2:308955/1‑140 (MQ=255)
                                                         tACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTaaaa                                                                             >  2:623969/1‑140 (MQ=255)
                                                         tACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTaaaa                                                                             >  2:273358/1‑140 (MQ=255)
                                                             aaaaaaaTTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAaatcaa                                                                         >  2:327081/1‑140 (MQ=255)
                                                                aaaaTTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCg                                                                      <  1:936568/140‑1 (MQ=255)
                                                                aaaaTTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCg                                                                      <  2:213325/140‑1 (MQ=255)
                                                                 aaaTTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGt                                                                     <  1:306333/140‑1 (MQ=255)
                                                                  aaTTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGtt                                                                    >  2:496876/1‑140 (MQ=255)
                                                                   aTTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTg                                                                   >  1:1042572/1‑140 (MQ=255)
                                                                     tACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGc                                                                 <  2:523661/140‑1 (MQ=255)
                                                                                gAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTcac                                                      >  2:865290/1‑140 (MQ=255)
                                                                                 aGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTcaca                                                     >  1:551275/1‑140 (MQ=255)
                                                                                  ggCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAg                                                    <  2:175698/140‑1 (MQ=255)
                                                                                  ggCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAg                                                    >  1:287498/1‑140 (MQ=255)
                                                                                  ggCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAg                                                    <  2:551275/140‑1 (MQ=255)
                                                                                  ggCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAg                                                    <  1:496876/140‑1 (MQ=255)
                                                                                  ggCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAg                                                    >  2:292607/1‑140 (MQ=255)
                                                                                  ggCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATACCTGTAAAATCAATCGTTGGCATAAATGTCACAg                                                    >  2:763577/1‑140 (MQ=255)
                                                                                      ttGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACg                                                <  1:623969/140‑1 (MQ=255)
                                                                                       tGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATTATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGc                                               >  2:1119785/1‑140 (MQ=255)
                                                                                       tGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGc                                               <  2:835175/140‑1 (MQ=255)
                                                                                        ggCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGcc                                              >  1:863917/1‑140 (MQ=255)
                                                                                          cAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAg                                            <  1:512860/140‑1 (MQ=255)
                                                                                           aaaTTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCGTAAATGTCACAGAACGCCAgc                                           <  1:1136581/140‑2 (MQ=255)
                                                                                              tttATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAAt                                        >  2:927209/1‑140 (MQ=255)
                                                                                                 attatCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGc                                     <  1:865290/140‑1 (MQ=255)
                                                                                                 attatCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGc                                     <  1:1043061/140‑1 (MQ=255)
                                                                                                  ttatCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCa                                    <  1:850663/140‑1 (MQ=255)
                                                                                                       tGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCg                               >  2:648859/1‑140 (MQ=255)
                                                                                                        ggCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGc                              >  2:2226/1‑140 (MQ=255)
                                                                                                        ggCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGc                              <  2:978708/140‑1 (MQ=255)
                                                                                                         gCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCa                             >  1:105666/1‑140 (MQ=255)
                                                                                                         gCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCa                             >  2:301291/1‑140 (MQ=255)
                                                                                                         gCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCa                             <  1:648571/140‑1 (MQ=255)
                                                                                                         gCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCa                             <  2:1042572/140‑1 (MQ=255)
                                                                                                         gCAAGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCa                             <  2:1031882/140‑1 (MQ=255)
                                                                                                            aGCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATAc                          >  1:607878/1‑140 (MQ=255)
                                                                                                             gCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACa                         >  2:866320/1‑140 (MQ=255)
                                                                                                             gCCTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACa                         >  2:111832/1‑140 (MQ=255)
                                                                                                               cTGAAAACGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATc                       >  2:1175238/1‑140 (MQ=255)
                                                                                                                   aaaCGAAATCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCaaaa                   <  2:79523/140‑1 (MQ=255)
                                                                                                                        aaaTCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAACTa              <  2:287498/140‑1 (MQ=255)
                                                                                                                        aaaTCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAACTa              >  1:186826/1‑140 (MQ=255)
                                                                                                                         aaTCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAACTaa             <  1:608515/140‑1 (MQ=255)
                                                                                                                         aaTCGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAACTaa             <  1:927209/140‑1 (MQ=255)
                                                                                                                            cGTTGTTAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAACTAAATg          >  1:51165/1‑140 (MQ=255)
                                                                                                                               tgttAAGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGTGGAAAAATGATGCCTGTAAAATTAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAATTAAATGTCa       <  1:638176/140‑1 (MQ=255)
                                                                                                                                    aGGGCAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAACTAAATGTCACTaac  <  2:778070/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
ATTCGCGTCGTCCCCACAGCGTCATTGTCAACGACGTACCAACTGATCCTGACAAGGTACGAAAAAAATTACTCATACTCGAGGCATTGGCAAATTTATTATCTGGCAAGCCTGAAAACGAAATCGTTGTTAAGGGTAAAAAGAAACAGGCAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAATGTCACAGAACGCCAGTAATAGCAAACCGCATACATCAAAAAACTAAATGTCACTAAC  >  NC_000913/2480889‑2481160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A