Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F28 I1 R1
|
228 |
65.7 |
2434974 |
91.7% |
2232871 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,682,157 |
(C)7→8 |
coding (589/3282 nt) |
yphG ← |
DUF5107 domain‑containing protein YphG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,682,150 | 1 | . | C | 100.0%
| 135.8
/ NA
| 39 | E199G (GAA→GGA) | yphG | DUF5107 domain‑containing protein YphG |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (23/16); total (23/16) |
CTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTT‑‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAAC > NC_000913/2682031‑2682282
|
cccaagaggAGTAGGCCTCTTAATACTGAGTGCGGATGGCGCGGGGTAAA‑CCGGAGACGTCTCGTTTC‑CCGTCGCCAACTCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCgg < 2:509631/133‑1 (MQ=255)
ggggAGTAGCCCTTTTTGTAGTAAGTGCGGGTAGCGGGGGGAAAG‑GGGGAGCCGCCCCGTTTG‑CCGTAACCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTgg < 2:73908/138‑1 (MQ=255)
ggggtgagtCCATTTTGTAGTAGGCG‑CGGGAGGGGGGGGGAAA‑GGGGGAGCCGCCCGTTTGCCCGTAAAAAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGc < 2:33040/134‑1 (MQ=255)
tagtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCccacc > 1:890858/1‑140 (MQ=255)
gtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCccacaca > 1:145661/1‑137 (MQ=255)
tttGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGaaa > 1:500724/1‑140 (MQ=255)
agtaAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcg > 1:59124/1‑140 (MQ=255)
agtaAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcg > 1:703279/1‑140 (MQ=255)
gCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtg > 2:1124431/1‑140 (MQ=255)
gCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtg > 2:1059281/1‑140 (MQ=255)
tAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGtt > 1:915920/1‑140 (MQ=255)
gtgggggggggAAAGGGGGAGCCGGCCCGTTTG‑CGGTGATAAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtggcgt < 2:234469/133‑1 (MQ=255)
gaGCGATGGGGAAG‑GGGGAGCCGGCCCTTTTG‑CCGTAATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGtt < 1:337553/139‑1 (MQ=255)
aTGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCg > 2:94081/1‑140 (MQ=255)
aTGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCg > 2:678631/1‑140 (MQ=255)
tGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGtt > 1:234469/1‑140 (MQ=255)
ccGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGAtt > 1:1077251/1‑140 (MQ=255)
gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgc > 1:609395/1‑140 (MQ=255)
gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgc > 1:596899/1‑140 (MQ=255)
ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgcg > 1:753472/1‑140 (MQ=255)
ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgcg > 2:672969/1‑140 (MQ=255)
ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgcg < 1:1070250/140‑1 (MQ=255)
cgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgcgc < 2:596899/140‑1 (MQ=255)
aTCCGGCGGGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGTGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTg < 2:1077251/140‑1 (MQ=255)
tacggcggGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGa < 1:1075274/138‑1 (MQ=255)
ggcggGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTc < 2:1096121/123‑1 (MQ=255)
ggcggGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTc > 1:1096121/1‑123 (MQ=255)
ggcggGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAAc > 2:240563/1‑140 (MQ=255)
gcggGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAAcc > 2:679590/1‑140 (MQ=255)
cggGAAGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCGGGGCGCAGGGTGAAACCt > 1:833026/1‑140 (MQ=255)
aaGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtca > 1:585781/1‑140 (MQ=255)
aGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCGGGGCGCAGGGTGAAACCTGtcat < 2:833026/140‑1 (MQ=255)
aGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcat < 2:631224/140‑1 (MQ=255)
aGACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcat < 2:753472/140‑1 (MQ=255)
gACGCTCTGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcatc > 2:918837/1‑140 (MQ=255)
ctctGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcat < 1:1093046/135‑1 (MQ=255)
ctctGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcat > 2:1093046/1‑135 (MQ=255)
ctctGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCt < 2:59124/140‑1 (MQ=255)
tctGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTg < 2:890858/140‑1 (MQ=255)
ctGATGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGt < 2:585781/140‑1 (MQ=255)
tGCCCTTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAAc < 1:459702/140‑1 (MQ=255)
|
CTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTTG‑CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTT‑‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAAC > NC_000913/2682031‑2682282
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
