Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,838,210	(A)_5→4	intergenic (‑105/+44)	hydN ← / ← ascG	putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,838,206	0	A	.	97.4%	310.3 / 2.3	78	intergenic (‑101/+48)	hydN/ascG	putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG
Reads supporting (aligned to +/- strand): ref base A (1/1); new base . (42/34); total (43/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

TTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGAAATCCCCGCCATCGAGCA  >  NC_000913/2838074‑2838339

ttACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAGTGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGaaaacgat                                                                                                                                >  2:574966/1‑136 (MQ=255)

  aCTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGt                                                                                                                             >  2:19409/1‑140 (MQ=255)

  aCTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGt                                                                                                                             >  2:498754/1‑140 (MQ=255)

  aCTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGt                                                                                                                             >  2:220356/1‑140 (MQ=255)

   cTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTc                                                                                                                            <  1:1213919/140‑1 (MQ=255)

     cgcgTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCAt                                                                                                                          <  2:487798/140‑1 (MQ=255)

      gcgTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGAAGG‑AAAACGATGTCATc                                                                                                                         <  1:268791/140‑1 (MQ=255)

        gTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGa                                                                                                                       >  2:838408/1‑140 (MQ=255)

          cAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGaca                                                                                                                     <  2:1172660/140‑1 (MQ=255)

              aaTGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAg                                                                                                                 <  1:827776/140‑1 (MQ=255)

               atgatgAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGt                                                                                                                <  1:632391/140‑1 (MQ=255)

                tgatgaAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTg                                                                                                               <  2:1129251/140‑1 (MQ=255)

                tgatgaAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTg                                                                                                               >  1:359133/1‑140 (MQ=255)

                tgatgaAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTg                                                                                                               >  2:293702/1‑140 (MQ=255)

                   tgaAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCAGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACg                                                                                                            <  1:1020242/140‑1 (MQ=255)

                     aaaCGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGAt                                                                                                          <  1:494498/140‑1 (MQ=255)

                       aCGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGa                                                                                                        >  2:170181/1‑140 (MQ=255)

                        cGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGAc                                                                                                       >  1:174322/1‑140 (MQ=255)

                          gTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACAt                                                                                                     >  2:80668/1‑140 (MQ=255)

                           ttCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGa                                                                                                           >  2:817141/1‑133 (MQ=255)

                           ttCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGa                                                                                                           <  1:817141/133‑1 (MQ=255)

                           ttCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACa                                                                                                      <  2:965507/138‑1 (MQ=255)

                           ttCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACa                                                                                                      >  1:965507/1‑138 (MQ=255)

                            tcatcaAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACAtgt                                                                                                   <  1:792279/140‑1 (MQ=255)

                               tcaAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGtgat                                                                                                <  2:1047409/140‑1 (MQ=255)

                               tcaAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGtgat                                                                                                >  1:835799/1‑140 (MQ=255)

                                   aTTCTCCAGCAGTGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACa                                                                                            <  1:574966/140‑1 (MQ=255)

                                     tctcCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACCGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGAc                                                                                                       <  1:1148262/127‑1 (MQ=255)

                                     tctcCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACCGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGAc                                                                                                       >  2:1148262/1‑127 (MQ=255)

                                       tcCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGt                                                                                        >  2:81720/1‑140 (MQ=255)

                                       tcCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGt                                                                                        >  2:972931/1‑140 (MQ=255)

                                               tGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATcgcg                                                                                >  1:549593/1‑140 (MQ=255)

                                                 aCAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGaa                                                                              <  1:838408/140‑1 (MQ=255)

                                                 aCAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGaa                                                                              <  1:952986/140‑1 (MQ=255)

                                                   aGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAgg                                                                            <  2:831157/140‑1 (MQ=255)

                                                   aGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAgg                                                                            >  1:1096691/1‑140 (MQ=255)

                                                   aGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAgg                                                                            <  2:652889/140‑1 (MQ=255)

                                                   aGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATCTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAgg                                                                            <  2:1128509/140‑1 (MQ=255)

                                                     ttAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAAG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAg                                                                          >  2:570065/1‑140 (MQ=255)

                                                      tAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGc                                                                         >  1:879195/1‑140 (MQ=255)

                                                       aaTGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATcgcg                                                                                <  2:614277/132‑1 (MQ=255)

                                                       aaTGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATcgcg                                                                                >  1:614277/1‑132 (MQ=255)

                                                         tGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAAt                                                                      >  1:757541/1‑140 (MQ=255)

                                                           cgcCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAAtga                                                                    >  1:237007/1‑140 (MQ=255)

                                                            gcCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAAtgag                                                                   <  2:1096691/140‑1 (MQ=255)

                                                             ccGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAAtgagt                                                                  >  1:763434/1‑140 (MQ=255)

                                                             ccGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAAtgagt                                                                  >  1:298136/1‑140 (MQ=255)

                                                             ccGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAAtgagt                                                                  >  1:87875/1‑140 (MQ=255)

                                                               gATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAAtgagtga                                                                >  2:614491/1‑140 (MQ=255)

                                                                 tACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATgagtgagt                                                              <  2:359133/140‑1 (MQ=255)

                                                                 tACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATgagtgagt                                                              <  1:80668/140‑1 (MQ=255)

                                                                      tCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCgcgg                                                         >  1:1193080/1‑140 (MQ=255)

                                                                        acaAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCgcggcg                                                       <  2:237007/140‑1 (MQ=255)

                                                                         caAATCATGCCAGATTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCgcggcg                                                       >  2:109571/1‑140 (MQ=255)

                                                                          aaaTCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCgcggcg                                                       <  1:1185609/138‑1 (MQ=255)

                                                                          aaaTCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCgcggcg                                                       >  2:1185609/1‑138 (MQ=255)

                                                                           aaTCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGAt                                                    <  2:84912/140‑1 (MQ=255)

                                                                            aTCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATc                                                   >  2:269824/1‑140 (MQ=255)

                                                                                tGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGtt                                               >  2:168902/1‑140 (MQ=255)

                                                                                tGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGtt                                               >  2:562386/1‑140 (MQ=255)

                                                                                tGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGtt                                               >  2:692502/1‑140 (MQ=255)

                                                                                tGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTAACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGtt                                               >  2:653634/1‑140 (MQ=255)

                                                                                 gCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGttt                                              >  2:39228/1‑140 (MQ=255)

                                                                                 gCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGttt                                              >  2:815605/1‑140 (MQ=255)

                                                                                 gCCAGTTTTTAATTTAATGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGttt                                              >  2:160806/1‑140 (MQ=255)

                                                                                        tttAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTg                                       >  1:213581/1‑140 (MQ=255)

                                                                                                aCTGTTATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGtttt                               >  1:1031286/1‑140 (MQ=255)

                                                                                                     tATTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTcggcg                          <  2:213581/140‑1 (MQ=255)

                                                                                                      aTTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTcggcgg                         <  1:168902/140‑1 (MQ=255)

                                                                                                      aTTTAAGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTcggcgg                         <  1:653634/140‑1 (MQ=255)

                                                                                                          aaGGAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTgag                     <  1:692502/140‑1 (MQ=255)

                                                                                                            ggAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGaa                   >  1:445065/1‑140 (MQ=255)

                                                                                                            ggAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGaa                   >  2:1064655/1‑140 (MQ=255)

                                                                                                            ggAAATTAATTTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGaa                   <  1:293702/140‑1 (MQ=255)

                                                                                                                 ttaattTCTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGGGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGAAATccc              >  2:1094056/1‑140 (MQ=255)

                                                                                                                       tCTGTAATGCAGGAAAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGAAATCCCCGCCa         <  1:109571/140‑1 (MQ=255)

                                                                                                                        cTGTAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGAAATCCCCGCCATc       <  1:1064655/140‑1 (MQ=255)

                                                                                                                           tAATGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGAAATCCCCGCCATCGAg    >  1:130022/1‑140 (MQ=255)

                                                                                                                             aTGCAGG‑AAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGAAATCCCCGCCATCGAGCa  <  1:160806/140‑1 (MQ=255)

TTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTTACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAACGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAGGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCTGAAGGTTTTCGGCGGTGAGAAATCCCCGCCATCGAGCA  >  NC_000913/2838074‑2838339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A