Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,008,218	G→A	A237T (GCC→ACC)	ygeX →	2,3‑diaminopropionate ammonia‑lyase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,008,218	0	G	A	100.0%	231.1 / NA	66	A237T (GCC→ACC)	ygeX	2,3‑diaminopropionate ammonia‑lyase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/36); total (30/36)

GGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATA  >  NC_000913/3008089‑3008353

ggTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGgtgt                                                                                                                               >  1:686934/1‑140 (MQ=255)

ggTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGgtgt                                                                                                                               >  1:655339/1‑140 (MQ=255)

  ttACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGc                                                                                                                             >  2:1097601/1‑140 (MQ=255)

    acacCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTg                                                                                                                           <  2:655339/140‑1 (MQ=255)

      acCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCggtg                                                                                                                                   <  2:954732/130‑1 (MQ=255)

      acCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCggtg                                                                                                                                   >  1:954732/1‑130 (MQ=255)

      acCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTggg                                                                                                                         >  2:571313/1‑140 (MQ=255)

      acCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTggg                                                                                                                         <  2:128426/140‑1 (MQ=255)

           aaTCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGtgtg                                                                                                                              <  2:1056922/130‑1 (MQ=255)

           aaTCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGtgtg                                                                                                                              >  1:1056922/1‑130 (MQ=255)

           aaTCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATc                                                                                                                    <  2:639068/140‑1 (MQ=255)

             tCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTg                                                                                                                  >  1:1090050/1‑140 (MQ=255)

                cAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTc                                                                                                               >  2:758628/1‑140 (MQ=255)

                  aCCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGtgtg                                                                                                                              >  2:40416/1‑123 (MQ=255)

                  aCCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGtgtg                                                                                                                              <  1:40416/123‑1 (MQ=255)

                  aCCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGa                                                                                                             <  2:828458/140‑1 (MQ=255)

                  aCCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGa                                                                                                             <  2:1130596/140‑1 (MQ=255)

                  aCCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGa                                                                                                             <  1:571313/140‑1 (MQ=255)

                       gATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTc                                                                                                               <  2:1096650/133‑1 (MQ=255)

                       gATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTc                                                                                                               >  1:1096650/1‑133 (MQ=255)

                            tGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGc                                                                                                   >  2:14064/1‑140 (MQ=255)

                            tGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGCGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGc                                                                                                   >  2:654033/1‑140 (MQ=255)

                             gCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGa                                                                                                             >  1:504814/1‑129 (MQ=255)

                             gCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGa                                                                                                             <  2:343838/129‑1 (MQ=255)

                             gCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGa                                                                                                             >  1:343838/1‑129 (MQ=255)

                             gCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGa                                                                                                             <  2:504814/129‑1 (MQ=255)

                             gCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGcc                                                                                                  >  2:1141279/1‑140 (MQ=255)

                             gCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGcc                                                                                                  >  1:418240/1‑140 (MQ=255)

                                aGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGc                                                                                               <  2:37969/140‑1 (MQ=255)

                                     aCGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAAt                                                                                          <  2:1090050/140‑1 (MQ=255)

                                      cGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATc                                                                                         >  1:1066823/1‑140 (MQ=255)

                                          aCCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGca                                                                                     <  2:551473/140‑1 (MQ=255)

                                          aCCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGca                                                                                     <  2:418240/140‑1 (MQ=255)

                                           cccTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGcac                                                                                    <  1:315957/140‑1 (MQ=255)

                                             cTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTg                                                                                       <  2:396434/135‑1 (MQ=255)

                                             cTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTg                                                                                       >  1:396434/1‑135 (MQ=255)

                                             cTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAg                                                                                  >  2:679563/1‑140 (MQ=255)

                                              tGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGcc                                                                                                  >  1:187669/1‑123 (MQ=255)

                                              tGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGcc                                                                                                  <  2:187669/123‑1 (MQ=255)

                                              tGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGc                                                                                 >  1:533420/1‑140 (MQ=255)

                                                gCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCat                                                                               <  1:758628/140‑1 (MQ=255)

                                                     tGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGca                                                                                     >  1:616026/1‑129 (MQ=255)

                                                     tGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGca                                                                                     <  2:616026/129‑1 (MQ=255)

                                                     tGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTAttg                                                                          >  1:772042/1‑140 (MQ=255)

                                                       aaGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTAttgtt                                                                        >  2:799998/1‑140 (MQ=255)

                                                       aaGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTAttgtt                                                                        <  1:1141279/140‑1 (MQ=255)

                                                       aaGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTAttgtt                                                                        <  2:1066823/140‑1 (MQ=255)

                                                                aGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGAc                                                               <  1:1097601/140‑1 (MQ=255)

                                                                 gCAAATGCATGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACa                                                              <  2:1198707/140‑1 (MQ=255)

                                                                  cAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACaa                                                             >  1:1116848/1‑140 (MQ=255)

                                                                    aaTGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAg                                                           <  2:837775/140‑1 (MQ=255)

                                                                    aaTGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAg                                                           <  1:186830/140‑1 (MQ=255)

                                                                        cGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGa                                                       <  2:686934/140‑1 (MQ=255)

                                                                          tGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACt                                                     <  1:883744/140‑1 (MQ=255)

                                                                            aaaTGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGt                                                   <  1:14064/140‑1 (MQ=255)

                                                                                  gCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTAt                                             <  2:174960/140‑1 (MQ=255)

                                                                                  gCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTAt                                             >  2:937210/1‑140 (MQ=255)

                                                                                                      ctgctgCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCg                          <  2:387460/139‑1 (MQ=255)

                                                                                                      ctgctgCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCg                          >  1:387460/1‑139 (MQ=255)

                                                                                                      ctgctgCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGa                         <  2:695814/140‑1 (MQ=255)

                                                                                                      ctgctgCAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGa                         <  1:428808/140‑1 (MQ=255)

                                                                                                         ctgcAAGCCGGTGTCGGAGCAATGACCGGTAGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACAt                      >  2:352133/1‑140 (MQ=255)

                                                                                                            cAAGCCGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGt                   >  1:23059/1‑140 (MQ=255)

                                                                                                                 cGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACg              <  1:799998/140‑1 (MQ=255)

                                                                                                                 cGGTGTCGGAGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACg              <  1:937210/140‑1 (MQ=255)

                                                                                                                          aGCAATGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTg     >  2:334206/1‑140 (MQ=255)

                                                                                                                             aaTGACCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGata  <  1:453133/140‑1 (MQ=255)

GGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATA  >  NC_000913/3008089‑3008353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A