Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,014,470	(C)_5→6	coding (588/771 nt)	yqeC ←	uncharacterized protein YqeC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,014,465	1	.	C	100.0%	270.2 / NA	77	A198G (GCG→GGG)	yqeC	uncharacterized protein YqeC
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (30/47); total (30/47)

TATATCGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑CCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCAAAGTATGT  >  NC_000913/3014326‑3014599

tataTCGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACg                                                                                                                                         <  1:1067830/140‑1 (MQ=255)

 atatCGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑c                                                                                                                                       <  1:48356/140‑1 (MQ=255)

 atatCGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑c                                                                                                                                       <  1:922142/140‑1 (MQ=255)

  tatCGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACgtc                                                                                                                                       <  1:364849/140‑3 (MQ=255)

    tCGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑cccc                                                                                                                                    >  2:787799/1‑140 (MQ=255)

     cGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACTGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑c                                                                                                                                       <  1:554577/136‑1 (MQ=255)

     cGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACTGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑c                                                                                                                                       >  2:554577/1‑136 (MQ=255)

     cGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑ccccc                                                                                                                                   <  1:1040149/140‑1 (MQ=255)

     cGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑ccccc                                                                                                                                   >  1:1204442/1‑140 (MQ=255)

     cGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑ccccc                                                                                                                                   >  2:847366/1‑140 (MQ=255)

       cccAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑cccccct                                                                                                                                 <  2:1077690/140‑3 (MQ=255)

       cccAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑cccccct                                                                                                                                 >  2:446057/1‑138 (MQ=255)

       cccAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑cccccct                                                                                                                                 >  1:1077690/1‑138 (MQ=255)

       cccAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑cccccct                                                                                                                                 >  1:873049/1‑138 (MQ=255)

       cccAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑cc                                                                                                                                      >  2:1043924/1‑135 (MQ=255)

       cccAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑cc                                                                                                                                      <  1:1043924/135‑1 (MQ=255)

         cagccagATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑cccccctga                                                                                                                               <  1:99770/140‑5 (MQ=255)

                aTTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGc                                                                                                                         >  1:116960/1‑140 (MQ=255)

                   gCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGaa                                                                                                                      <  2:531710/140‑1 (MQ=255)

                    ccTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAAc                                                                                                                     <  2:922320/140‑1 (MQ=255)

                    ccTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAAc                                                                                                                     >  1:561313/1‑140 (MQ=255)

                      tctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCg                                                                                                                        <  1:798491/135‑1 (MQ=255)

                      tctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCg                                                                                                                        >  2:798491/1‑135 (MQ=255)

                      tctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCa                                                                                                                   >  2:984355/1‑140 (MQ=255)

                      tctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCa                                                                                                                   >  1:801090/1‑140 (MQ=255)

                       ctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAg                                                                                                                  <  1:26215/140‑1 (MQ=255)

                       ctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAg                                                                                                                  <  2:1154653/140‑1 (MQ=255)

                       ctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAg                                                                                                                  <  2:116960/140‑1 (MQ=255)

                       ctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAg                                                                                                                  >  1:1154653/1‑140 (MQ=255)

                       ctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAg                                                                                                                  <  2:604413/140‑1 (MQ=255)

                       ctACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAg                                                                                                                  <  2:873049/140‑1 (MQ=255)

                          cgtcgtGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAgcgc                                                                                                               <  1:718823/140‑1 (MQ=255)

                          cgtcgtGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAgcgc                                                                                                               <  1:353300/140‑1 (MQ=255)

                            tcgtGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCaa                                                                                                             >  2:897215/1‑140 (MQ=255)

                              gtgtTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACg                                                                                                           >  1:176849/1‑140 (MQ=255)

                               tgttgtTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACga                                                                                                          <  1:756561/140‑1 (MQ=255)

                                   gttgCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATc                                                                                                      >  2:974635/1‑140 (MQ=255)

                                      gCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCt                                                                                                   <  2:1204442/140‑1 (MQ=255)

                                           ggTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTc                                                                                                  <  1:367520/136‑1 (MQ=255)

                                           ggTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTc                                                                                                  >  2:367520/1‑136 (MQ=255)

                                            gTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTg                                                                                             >  1:760832/1‑140 (MQ=255)

                                                  ggAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGt                                                                                       <  1:897215/140‑1 (MQ=255)

                                                   gAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGtt                                                                                      <  1:504689/140‑1 (MQ=255)

                                                      cTCGCTTTGTGTAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCt                                                                                                   <  1:1094920/124‑1 (MQ=255)

                                                      cTCGCTTTGTGTAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCt                                                                                                   >  2:1094920/1‑124 (MQ=255)

                                                      cTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCa                                                                                   >  1:382881/1‑140 (MQ=255)

                                                      cTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCa                                                                                   >  2:138625/1‑140 (MQ=255)

                                                        cGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATc                                                                                 <  1:290467/140‑1 (MQ=255)

                                                        cGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCACTCAGTTGCAAGGTTGCATc                                                                                 <  2:801090/140‑1 (MQ=255)

                                                             tgtgCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGATATCGCTCAGTTGCAAGGTTGCATCAGgtg                                                                            >  1:219323/1‑140 (MQ=255)

                                                             tgtgCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGgtg                                                                            >  2:975040/1‑140 (MQ=255)

                                                              gtgCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGgtgt                                                                           >  2:487153/1‑140 (MQ=255)

                                                              gtgCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGgtgt                                                                           <  2:117489/140‑1 (MQ=255)

                                                              gtgCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTACAAGGTTGCATCAGgtgt                                                                           <  2:1158511/140‑1 (MQ=255)

                                                                gCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTa                                                                         >  1:1050532/1‑140 (MQ=255)

                                                                 cAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTaa                                                                        <  1:865477/140‑1 (MQ=255)

                                                                  aaTCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAAc                                                                       <  2:760832/140‑1 (MQ=255)

                                                                    tCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAAccc                                                                     >  1:1135555/1‑140 (MQ=255)

                                                                       cATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGt                                                                  <  2:561313/140‑1 (MQ=255)

                                                                            tcACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAatat                                                             >  2:874786/1‑140 (MQ=255)

                                                                                  tGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCaa                                                       >  1:323942/1‑140 (MQ=255)

                                                                                    agaAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAAc                                                     >  1:130268/1‑140 (MQ=255)

                                                                                    agaAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAAc                                                     >  1:131808/1‑140 (MQ=255)

                                                                                          aCGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGAc                                               >  1:185069/1‑140 (MQ=255)

                                                                                           cGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGAcc                                              <  2:323942/140‑1 (MQ=255)

                                                                                            ggTTAATGACCCAGCCTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGACCCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCa                                             <  2:761414/140‑1 (MQ=255)

                                                                                                aaTGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGa                                         <  1:932447/140‑1 (MQ=255)

                                                                                                aaTGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGa                                         <  2:1145601/140‑1 (MQ=255)

                                                                                                  tGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGATATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATg                                       <  2:219323/140‑1 (MQ=255)

                                                                                                     aCCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGAc                                    <  2:176849/140‑1 (MQ=255)

                                                                                                     aCCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGAc                                    <  1:847366/140‑1 (MQ=255)

                                                                                                        aGACTCGCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACAtt                                 >  1:818300/1‑140 (MQ=255)

                                                                                                              gCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCtgt                           >  1:1173232/1‑140 (MQ=255)

                                                                                                              gCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCt                             <  1:861481/138‑1 (MQ=255)

                                                                                                              gCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCt                             >  2:102208/1‑138 (MQ=255)

                                                                                                              gCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCt                             <  1:102208/138‑1 (MQ=255)

                                                                                                              gCCGACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTCAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCtgt                           <  1:446057/140‑1 (MQ=255)

                                                                                                              gCCGACAACCTTGCGGTACGTGTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCt                             >  2:861481/1‑138 (MQ=255)

                                                                                                                 gACAACCTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCt                        <  2:818300/140‑1 (MQ=255)

                                                                                                                       cTTGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAACGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACttt                  <  2:689335/140‑1 (MQ=255)

                                                                                                                        ttGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGGCCAGCGATGGACATTTTCTGTGCTCACTTTc                 <  2:118127/140‑1 (MQ=255)

                                                                                                                        ttGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTc                 >  1:682853/1‑140 (MQ=255)

                                                                                                                        ttGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTc                 <  2:1173232/140‑1 (MQ=255)

                                                                                                                         tGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTcg                <  2:185069/140‑1 (MQ=255)

                                                                                                                         tGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTcg                >  2:106579/1‑140 (MQ=255)

                                                                                                                         tGCGGTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTcg                <  2:130268/140‑1 (MQ=255)

                                                                                                                            ggTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCgcgc             <  1:974635/140‑1 (MQ=255)

                                                                                                                             gtccGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGcc            <  2:1050532/137‑1 (MQ=255)

                                                                                                                             gTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGcc            <  2:682853/140‑1 (MQ=255)

                                                                                                                             gTACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGcc            <  2:486183/140‑1 (MQ=255)

                                                                                                                              tACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGccc           <  1:787799/140‑1 (MQ=255)

                                                                                                                              tACGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGccc           <  2:382881/140‑1 (MQ=255)

                                                                                                                                cGTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCaa         <  1:975040/140‑1 (MQ=255)

                                                                                                                                 gTTTTTAAACGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCaaa        <  2:351794/140‑1 (MQ=255)

                                                                                                                                       aaaCGCCCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCAAAGTATGt  <  1:487153/140‑1 (MQ=255)

TATATCGCCCAGCCAGATTGCCTCTACGTCGTGTTGTTGCAGCGGTTGAAGGAGCTCGCTTTGTGCAATCGCATTCTCACATTGAGAAAAACGGTTAATGAACCAGACTCGCCGACAACCTTGCGGTACGTTTTTAAACG‑CCCCCTGAGGGTGGCGAACCAGCGCAACGAGATCGCTCAGTTGCAAGGTTGCATCAGGTGTTAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCAAAGTATGT  >  NC_000913/3014326‑3014599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A