Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 228 65.7 2434974 91.7% 2232871 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,084,513 T→C N467D (AAC→GAC)  speA ← arginine decarboxylase, biosynthetic

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,084,5130TC100.0% 276.5 / NA 77N467D (AAC→GAC) speAarginine decarboxylase, biosynthetic
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/42);  total (35/42)

CCCTTCCAGCGGCAGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTTTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGCAGATCCATCTGACTG  >  NC_000913/3084376‑3084643
                                                                                                                                         |                                                                                                                                  
cccTTCCAGCGGCAGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGtctt                                                                                                                                  >  1:944467/1‑140 (MQ=255)
 ccTTCCAGCGGCAGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTg                                                                                                                                 >  1:726305/1‑140 (MQ=255)
 ccTTCCAGCGGCAGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTg                                                                                                                                 >  1:614391/1‑140 (MQ=255)
   ttCCAGCGGCAGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGtctt                                                                                                                                  >  1:558680/1‑137 (MQ=255)
     ccAGCGGCAGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCTATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGa                                                                                                                             >  2:5079/1‑140 (MQ=255)
           gCAGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAgc                                                                                                                       <  2:972919/140‑1 (MQ=255)
             aGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAgctg                                                                                                                     >  1:635116/1‑140 (MQ=255)
             aGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAgctg                                                                                                                     >  1:449102/1‑140 (MQ=255)
               aaCCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAgctgct                                                                                                                   >  1:23004/1‑140 (MQ=255)
                aCCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATCCGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCtt                                                                                                                  <  2:841062/140‑1 (MQ=255)
                    ggAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGc                                                                                                              <  2:752452/140‑1 (MQ=255)
                     gAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCa                                                                                                             <  2:333298/140‑1 (MQ=255)
                     gAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCa                                                                                                             <  2:726305/140‑1 (MQ=255)
                     gAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCa                                                                                                             <  2:944467/140‑1 (MQ=255)
                     gAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCa                                                                                                             <  2:802423/140‑1 (MQ=255)
                     gAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCa                                                                                                             <  2:1136584/140‑1 (MQ=255)
                     gAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCa                                                                                                             >  2:1157242/1‑140 (MQ=255)
                      aacaacTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCAc                                                                                                            <  2:614391/140‑1 (MQ=255)
                           cTGGTCGATCCCCCATGCGTCCGGCATCGTCTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCAt                                                                                                       >  2:1145305/1‑140 (MQ=255)
                              gTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAATTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGc                                                                                                    >  2:553765/1‑140 (MQ=255)
                              gTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGc                                                                                                    >  1:302161/1‑140 (MQ=255)
                              gTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGc                                                                                                    >  2:790603/1‑140 (MQ=255)
                               tCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGTGGATCCAGCTGCTTTTGCACTTCATGGca                                                                                                   <  1:607697/140‑1 (MQ=255)
                               tCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGca                                                                                                   <  1:553765/140‑1 (MQ=255)
                               tCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGca                                                                                                   <  2:75310/140‑1 (MQ=255)
                                 gATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGcaca                                                                                                 <  2:23004/140‑1 (MQ=255)
                                   tCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATg                                                                                               >  2:365262/1‑140 (MQ=255)
                                         aTGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGAGGTATAGTGTGTCCGAGATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCaaa                                                                                         >  2:1207883/1‑140 (MQ=255)
                                            cGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGTACTTCATGGcaca                                                                                                 <  1:917732/129‑1 (MQ=255)
                                            cGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGTACTTCATGGcaca                                                                                                 >  2:917732/1‑129 (MQ=255)
                                             gTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGca                                                                                                   >  1:773166/1‑126 (MQ=255)
                                             gTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGca                                                                                                   <  2:773166/126‑1 (MQ=255)
                                             gTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATaaa                                                                                     >  2:627067/1‑140 (MQ=255)
                                             gTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATaaa                                                                                     <  2:204598/140‑1 (MQ=255)
                                             gTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATaaa                                                                                     >  1:325345/1‑140 (MQ=255)
                                             gTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATaaa                                                                                     >  1:204598/1‑140 (MQ=255)
                                              tCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAg                                                                                    >  1:550508/1‑140 (MQ=255)
                                              tCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAg                                                                                    >  1:808245/1‑140 (MQ=255)
                                              tCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAg                                                                                    >  1:1040138/1‑140 (MQ=255)
                                              tCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAg                                                                                    >  1:10790/1‑140 (MQ=255)
                                                     tCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCa                                                                             >  1:772819/1‑140 (MQ=255)
                                                       gACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGc                                                                           <  1:1027984/140‑1 (MQ=255)
                                                       gACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGc                                                                           <  2:876586/140‑1 (MQ=255)
                                                            gAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATg                                                                      <  1:1001046/140‑1 (MQ=255)
                                                                  cGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGtt                                                                >  1:364548/1‑140 (MQ=255)
                                                                    agaAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGc                                                                           <  1:307432/127‑1 (MQ=255)
                                                                    agaAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGc                                                                           >  2:307432/1‑127 (MQ=255)
                                                                      aaGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTg                                                            <  2:772819/140‑1 (MQ=255)
                                                                      aaGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTg                                                            <  1:340975/140‑1 (MQ=255)
                                                                      aaGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTg                                                            <  1:1157242/140‑1 (MQ=255)
                                                                      aaGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTg                                                            <  2:808245/140‑1 (MQ=255)
                                                                               tACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTaaa                                                   >  2:1088449/1‑140 (MQ=255)
                                                                                   ttttGTCTGCTATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATg                                               >  2:693154/1‑140 (MQ=255)
                                                                                      tGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGTAGGCTAAAGATGCCg                                            >  2:524304/1‑140 (MQ=255)
                                                                                      tGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCg                                            >  2:360145/1‑140 (MQ=255)
                                                                                      tGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCg                                            <  1:627067/140‑1 (MQ=255)
                                                                                          cGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAag                                        >  2:51958/1‑140 (MQ=255)
                                                                                          cGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAag                                        >  1:1015948/1‑140 (MQ=255)
                                                                                           gCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAaga                                       <  1:360145/140‑1 (MQ=255)
                                                                                            ccATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAagag                                      >  2:817034/1‑140 (MQ=255)
                                                                                            ccATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAagag                                      <  2:10790/140‑1 (MQ=255)
                                                                                            ccATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAagag                                      <  1:790603/140‑1 (MQ=255)
                                                                                               tACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAg                                   <  2:1198181/140‑1 (MQ=255)
                                                                                                aCGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGc                                  <  1:693154/140‑1 (MQ=255)
                                                                                                 ccttCCTGCCGCTCGTCGATAATCGGACGATGAGCCAGGTTTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCCCAAATAAAGCTGCTCAGCCCATGCCCGTTCTTGCCGGCTAAAGATGCCGGAAGAGTAGcc                                 <  2:550508/138‑1 (MQ=255)
                                                                                                 cGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGcc                                 <  1:1145305/140‑1 (MQ=255)
                                                                                                 cGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGcc                                 <  1:268993/140‑1 (MQ=255)
                                                                                                 cGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGcc                                 <  1:1207883/140‑1 (MQ=255)
                                                                                                      cTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAg                                   >  1:764723/1‑133 (MQ=255)
                                                                                                      cTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAg                                   <  2:764723/133‑1 (MQ=255)
                                                                                                      cTGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGatat                            <  1:770168/140‑1 (MQ=255)
                                                                                                       tGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGc                                  <  2:37361/133‑1 (MQ=255)
                                                                                                       tGCAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGc                                  >  1:37361/1‑133 (MQ=255)
                                                                                                         cAGCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGATATGaa                         >  2:918769/1‑140 (MQ=255)
                                                                                                           gCTCGTCGATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGATATGAATg                       <  1:607058/140‑1 (MQ=255)
                                                                                                              cgtcgATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGcc                                 <  2:439605/127‑1 (MQ=255)
                                                                                                              cgtcgATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGcc                                 >  1:439605/1‑127 (MQ=255)
                                                                                                                 cgATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGGAGAGTAGCCGATATGAATGTCGTGc                 <  1:1062534/140‑1 (MQ=255)
                                                                                                                 cgATAATCGGACGATGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGc                 <  2:1015948/140‑1 (MQ=255)
                                                                                                                               tGAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGCAGATCCATCTGACt   >  1:680853/1‑140 (MQ=255)
                                                                                                                                gAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGCAGATCCATCTGACTg  <  2:635116/140‑1 (MQ=255)
                                                                                                                                gAGCACGGTCTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGCAGATCCATCTGACTg  <  2:449102/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
CCCTTCCAGCGGCAGAACCGGGAACAACTGGTCGATCCCCCATGCGTCCGGCATCGACTGGAACAGCGAGAAGTTGACGTACATTTTGTCCGCCATACGTTCCTGCAGCTCGTCGATAATCGGACGATGAGCACGGTTTTGCGGATCCAGCTGCTTTTGCACTTCATGGCACATGCTCAAATAAAGCTGCTCAGCCCATGCACGTTCTTGCAGGCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGCAGATCCATCTGACTG  >  NC_000913/3084376‑3084643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A