Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,490,412	A→G	C140R (TGC→CGC)	pabA ←	aminodeoxychorismate synthase subunit 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,490,412	0	A	G	100.0%	228.2 / NA	64	C140R (TGC→CGC)	pabA	aminodeoxychorismate synthase subunit 2
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (27/37); total (27/37)

CAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCATGACCTTTGCGGCG  >  NC_000913/3490275‑3490545

cAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATCCTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGcgcg                                                                                                                                     <  1:706387/140‑1 (MQ=255)

cAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGcgcg                                                                                                                                     >  1:996251/1‑140 (MQ=255)

  ggAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCt                                                                                                                                   <  2:913169/140‑1 (MQ=255)

  ggAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCt                                                                                                                                   <  1:148156/140‑1 (MQ=255)

      aTTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTa                                                                                                                               <  2:321686/140‑1 (MQ=255)

        tAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAAt                                                                                                                             >  2:1191431/1‑140 (MQ=255)

            cagcagTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGt                                                                                                                         <  2:395049/140‑1 (MQ=255)

              gcagTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCa                                                                                                                       <  2:996251/140‑1 (MQ=255)

                 gTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGt                                                                                                                    <  1:740149/140‑1 (MQ=255)

                    gATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTcc                                                                                                                 >  1:415715/1‑140 (MQ=255)

                     aTGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTcca                                                                                                                <  1:274416/140‑1 (MQ=255)

                          cTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTccaccacc                                                                                                           >  2:954393/1‑140 (MQ=255)

                           ttGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTccaccacca                                                                                                          <  1:732780/140‑1 (MQ=255)

                            tGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAg                                                                                                         >  1:289713/1‑140 (MQ=255)

                            tGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAg                                                                                                         >  1:38699/1‑140 (MQ=255)

                             gTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGc                                                                                                        <  1:1054560/140‑1 (MQ=255)

                                cGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGaa                                                                                                     <  2:40687/140‑1 (MQ=255)

                                cGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGaa                                                                                                     >  2:122165/1‑140 (MQ=255)

                                  cTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATg                                                                                                   >  2:1200618/1‑140 (MQ=255)

                                   tAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATgg                                                                                                  >  1:125751/1‑140 (MQ=255)

                                    aaGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGt                                                                                                 >  2:620432/1‑140 (MQ=255)

                                    aaGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGt                                                                                                 >  1:1160195/1‑140 (MQ=255)

                                    aaGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGt                                                                                                 <  1:286520/140‑1 (MQ=255)

                                      gAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAg                                                                                               <  2:771346/140‑1 (MQ=255)

                                      gAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAg                                                                                               <  2:228884/140‑1 (MQ=255)

                                             ttCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCgtgt                                                                                          <  1:220491/138‑1 (MQ=255)

                                             ttCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCgtgt                                                                                          >  2:220491/1‑138 (MQ=255)

                                             ttCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCa                                                                                        >  1:534278/1‑140 (MQ=255)

                                             ttCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCa                                                                                        <  1:1200618/140‑1 (MQ=255)

                                             ttCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCa                                                                                        <  1:954393/140‑1 (MQ=255)

                                                 ggatggaACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGt                                                                                    >  1:446833/1‑140 (MQ=255)

                                                 ggatggaACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGt                                                                                    <  2:446833/140‑1 (MQ=255)

                                                   atggaACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTaa                                                                                  <  1:403259/140‑1 (MQ=255)

                                                      gaACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTg                                                                               >  2:317093/1‑140 (MQ=255)

                                                         cTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGAt                                                                            <  2:1160195/140‑1 (MQ=255)

                                                            cacaCCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTg                                                                         >  1:992169/1‑140 (MQ=255)

                                                            cacaCCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTg                                                                         >  1:34977/1‑140 (MQ=255)

                                                                 cTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGc                                                                    >  1:226963/1‑140 (MQ=255)

                                                                 cTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGc                                                                    <  2:38699/140‑1 (MQ=255)

                                                                   tCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGccc                                                                  >  1:676567/1‑140 (MQ=255)

                                                                         tCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGaaa                                                            <  2:992169/140‑1 (MQ=255)

                                                                           ccACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATa                                                          >  1:306432/1‑140 (MQ=255)

                                                                                ggcgatggcgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGACCCCGAAATACGccc                                                     <  1:1152502/140‑1 (MQ=255)

                                                                                  cgatggcgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTc                                                   >  1:626950/1‑140 (MQ=255)

                                                                                   gatggcgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCa                                                  <  1:1191431/140‑1 (MQ=255)

                                                                                   gatggcgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCa                                                  <  2:226963/140‑1 (MQ=255)

                                                                                   gatggcgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCa                                                  <  1:122165/140‑1 (MQ=255)

                                                                                     tggcgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCAcc                                                <  2:676567/140‑1 (MQ=255)

                                                                                      ggcgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCg                                               <  2:534278/140‑1 (MQ=255)

                                                                                      ggcgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCg                                               >  2:565749/1‑140 (MQ=255)

                                                                                        cgaATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGtt                                             <  2:415715/140‑1 (MQ=255)

                                                                                           aTCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTAtg                                          >  2:768481/1‑140 (MQ=255)

                                                                                                       tctcGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTa                                      <  1:502143/132‑1 (MQ=255)

                                                                                                       tctcGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTa                                      >  2:502143/1‑132 (MQ=255)

                                                                                                         tcGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTaa                                     <  2:79270/131‑1 (MQ=255)

                                                                                                         tcGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTaa                                     >  1:79270/1‑131 (MQ=255)

                                                                                                         tcGGGTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAgg                            >  1:21810/1‑140 (MQ=255)

                                                                                                           gggTTTCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATATGCCCTCACCGTTATGTGTAATCGGCGAGGtt                          <  2:306432/140‑1 (MQ=255)

                                                                                                              tttCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTg                       <  1:768481/140‑1 (MQ=255)

                                                                                                               ttCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGc                      <  2:289713/140‑1 (MQ=255)

                                                                                                                tCGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGcc                     >  1:828916/1‑140 (MQ=255)

                                                                                                                 cGCTCCAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCg                    >  1:1198771/1‑140 (MQ=255)

                                                                                                                      cAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCAt               <  2:601238/140‑1 (MQ=255)

                                                                                                                      cAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCAt               <  2:828916/140‑1 (MQ=255)

                                                                                                                      cAGGCCGTCACGTCAAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCAt               <  2:1005417/140‑1 (MQ=255)

                                                                                                                                   caAAGCGCGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCATGACCTTTgcggcg  <  2:125751/140‑1 (MQ=255)

CAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCATGACCTTTGCGGCG  >  NC_000913/3490275‑3490545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A