Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,521,143	T→C	T103A (ACG→GCG)	hofO ←	DNA utilization protein HofO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,521,143	0	T	C	100.0%	205.7 / NA	58	T103A (ACG→GCG)	hofO	DNA utilization protein HofO
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (27/31); total (27/31)

GTTTAACCCTCATGCGGCGTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGTTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGGTGTCTACCAGGCGA  >  NC_000913/3521007‑3521273

gTTTAACCCTCATGCGGCGTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGcttt                                                                                                                                 <  1:166880/140‑1 (MQ=255)

          cATGCGGCGTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAAc                                                                                                                       >  2:1201602/1‑140 (MQ=255)

           aTGCGGCGTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACt                                                                                                                      <  1:530340/140‑1 (MQ=255)

            tGCGGCGTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTc                                                                                                                     >  1:546448/1‑140 (MQ=255)

            tGCGGCGTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTc                                                                                                                     >  1:376663/1‑140 (MQ=255)

              cggcgTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGc                                                                                                                   <  1:725298/140‑1 (MQ=255)

                gcgTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCt                                                                                                                 <  1:849611/140‑1 (MQ=255)

                gcgTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCt                                                                                                                 <  2:239122/140‑1 (MQ=255)

                  gTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTcc                                                                                                               <  2:418878/140‑1 (MQ=255)

                  gTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTcc                                                                                                               <  1:456517/140‑1 (MQ=255)

                       cAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTgcg                                                                                                          <  1:258489/140‑1 (MQ=255)

                                cGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCggatggat                                                                                                 <  2:27969/140‑1 (MQ=255)

                                   gAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGcc                                                                                              >  2:357857/1‑140 (MQ=255)

                                    aaCAAAAGATGATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCa                                                                                             <  1:833775/140‑1 (MQ=255)

                                     aCAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCggatggat                                                                                                 <  2:462788/135‑1 (MQ=255)

                                     aCAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCggatggat                                                                                                 >  1:462788/1‑135 (MQ=255)

                                       aaaaGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGa                                                                                          <  2:1126362/140‑1 (MQ=255)

                                              catcaCCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGt                                                                                   >  1:236911/1‑140 (MQ=255)

                                              catcaCCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGt                                                                                   >  1:966679/1‑140 (MQ=255)

                                                   ccTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTgcgc                                                                              >  2:1183529/1‑140 (MQ=255)

                                                   ccTTCCACGCTTAAAGAAAAACGGCTCACTCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACCGCACTCCTTCCCACAGCGCTTTCAACGCCAACTCGCCTTCCTGCGCGGATGGATGCCAGGAAACCAGTTgcgc                                                                              >  2:161803/1‑140 (MQ=255)

                                                    cTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTgcgcg                                                                             <  2:1162970/140‑1 (MQ=255)

                                                      tCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGcc                                                                           >  1:473678/1‑140 (MQ=255)

                                                      tCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGcc                                                                           >  2:401460/1‑140 (MQ=255)

                                                       ccACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGcct                                                                          >  1:618676/1‑139 (MQ=255)

                                                        cACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTgcgcg                                                                             <  2:525473/136‑1 (MQ=255)

                                                        cACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTgcgcg                                                                             >  1:525473/1‑136 (MQ=255)

                                                        cACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCgg                                                                         >  2:1068043/1‑140 (MQ=255)

                                                        cACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCgg                                                                         >  1:278990/1‑140 (MQ=255)

                                                           gCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATa                                                                      <  1:2100/140‑1 (MQ=255)

                                                           gCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATa                                                                      <  2:278990/140‑1 (MQ=255)

                                                           gCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTACTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATa                                                                      <  2:966679/140‑1 (MQ=255)

                                                              tAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTgcg                                                                               >  2:410919/1‑128 (MQ=255)

                                                              tAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTgcg                                                                               <  1:410919/128‑1 (MQ=255)

                                                               aaCGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTg                                                                  >  2:133060/1‑140 (MQ=255)

                                                                     aaaCGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGaaaa                                                              >  2:106926/1‑138 (MQ=255)

                                                                     aaaCGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGaaaa                                                              <  1:106926/138‑1 (MQ=255)

                                                                       aCGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCa                                                          <  2:1191339/140‑1 (MQ=255)

                                                                          gCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTg                                                       <  2:977302/140‑1 (MQ=255)

                                                                           cTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTgg                                                      >  2:1116581/1‑140 (MQ=255)

                                                                           cTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTgg                                                      >  1:262732/1‑140 (MQ=255)

                                                                                   gACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAgg                                              >  1:348732/1‑140 (MQ=255)

                                                                                     cGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGc                                            <  1:330765/140‑1 (MQ=255)

                                                                                               tGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGtttttt                                  <  1:1201602/140‑1 (MQ=255)

                                                                                                         gtAAATGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGaa                        <  2:376663/140‑1 (MQ=255)

                                                                                                              tGCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAg                   <  2:1050159/140‑1 (MQ=255)

                                                                                                               gCCGACGGCACTGCTTCCCACAGCGCTTTCAGCGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAg                   <  2:1072954/139‑1 (MQ=255)

                                                                                                               gCCGACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAg                   >  1:1072954/1‑139 (MQ=255)

                                                                                                                  gACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAg                   <  2:198983/136‑1 (MQ=255)

                                                                                                                  gACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAg                   >  2:1144727/1‑136 (MQ=255)

                                                                                                                  gACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAg                   >  1:198983/1‑136 (MQ=255)

                                                                                                                  gACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAg                   <  1:1144727/136‑1 (MQ=255)

                                                                                                                  gACGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGgt               <  1:357857/140‑1 (MQ=255)

                                                                                                                   aCGGCACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGgtg              >  1:400792/1‑140 (MQ=255)

                                                                                                                       cACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGGTGTCTa          <  1:468072/140‑1 (MQ=255)

                                                                                                                       cACTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGGTGTCTa          <  1:1049718/140‑1 (MQ=255)

                                                                                                                         cTGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGGTGTCTAcc        <  2:674360/140‑1 (MQ=255)

                                                                                                                          tGCTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGGTGTCTACCa       >  1:989135/1‑140 (MQ=255)

                                                                                                                            cTTCCCACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGGTGTCTACCAgg     >  2:6067/1‑140 (MQ=255)

                                                                                                                               cccACAGCGCTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGGTGTCTACCAGGCGa  >  2:680278/1‑140 (MQ=255)

GTTTAACCCTCATGCGGCGTCTCCAGTTGTAGCGTGAACAAAAGATCATCACCTTCCACGCTTAACGAAAAACGGCTCACGCTGACGTTGCGCTCTGCCAGCCGTGTAAATGCCGACGGCACTGCTTCCCACAGCGTTTTCAACGCCAACTCGCCTCCCTGCGCGGATGGATGCCAGGAAACCAGTTGCGCGCCGGATAACTGAAAATCCAGTGGCGAAAAGGGCAGCGTTTTTTCCTCGCTGAAGGGAGCGGTGTCTACCAGGCGA  >  NC_000913/3521007‑3521273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A