Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,798,725	A→G	D196D (GAT→GAC)	waaU ←	putative ADP‑heptose:LPS heptosyltransferase 4

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,798,725	0	A	G	98.9%	305.8 / ‑4.8	87	D196D (GAT→GAC)	waaU	putative ADP‑heptose:LPS heptosyltransferase 4
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (33/53); total (34/53)
Fisher's exact test for biased strand distribution p-value = 3.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

TTTCAAAGTGTGTTTTCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCT  >  NC_000913/3798589‑3798861

tttCAAAGTGTGTTTTCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCt                                                                                                                                       <  1:727328/140‑1 (MQ=255)

 ttCAAAGTGTGTTTTCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTa                                                                                                                                      >  2:962968/1‑140 (MQ=255)

 ttCAAAGTGTGTTTTCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTa                                                                                                                                      <  2:1150928/140‑1 (MQ=255)

      aGTGTGTTTTCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGt                                                                                                                                 <  1:489113/140‑1 (MQ=255)

          tgtTTTCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTc                                                                                                                                        >  1:283618/1‑129 (MQ=255)

           gtTTTCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATg                                                                                                                            <  1:255455/140‑1 (MQ=255)

            ttttCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGc                                                                                                                           <  1:1061189/140‑1 (MQ=255)

                  cttcttGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACATAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCg                                                                                                                     >  2:1197124/1‑140 (MQ=255)

                      ttGATATATAACTTTTATTTGCTCAAACGTAAGACGACATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGt                                                                                                                 <  1:354994/140‑1 (MQ=255)

                            tataACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTtggtgg                                                                                                           <  1:1182135/140‑1 (MQ=255)

                            tataACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGAtggtgg                                                                                                           <  2:1186652/140‑1 (MQ=255)

                             ataACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTATTGGTTTAATATTGACTATTCTTGTATCTCCATTAAATTTTTTTATTTTATCTTCAACTTCTACTGGAAAATCCAGGCCGAAGTtgtggga                                                                                                          >  2:480788/1‑135 (MQ=255)

                             ataACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGa                                                                                                          >  1:240541/1‑140 (MQ=255)

                             ataACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGa                                                                                                          >  2:68175/1‑140 (MQ=255)

                               aaCTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATTGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGaaa                                                                                                        >  1:1150235/1‑140 (MQ=255)

                               aaCTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGaaa                                                                                                        >  2:1188119/1‑140 (MQ=255)

                               aaCTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGaaa                                                                                                        >  2:72458/1‑140 (MQ=255)

                                 cTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAAt                                                                                                      <  1:265604/140‑1 (MQ=255)

                                    ttATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTa                                                                                                   >  1:393403/1‑140 (MQ=255)

                                      aTTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTAcc                                                                                                 <  2:393403/140‑1 (MQ=255)

                                       attGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTAccc                                                                                                <  1:886097/139‑1 (MQ=255)

                                        tttgtCAAAAGTTAGGCGGCATTTTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCt                                                                                               <  1:480788/136‑1 (MQ=255)

                                        ttGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCt                                                                                               <  1:748266/140‑1 (MQ=255)

                                        ttGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCt                                                                                               <  2:1182866/140‑1 (MQ=255)

                                        ttGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCt                                                                                               <  2:520689/140‑1 (MQ=255)

                                        ttGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCt                                                                                               <  1:343746/140‑1 (MQ=255)

                                         tGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTc                                                                                              <  2:527612/140‑1 (MQ=255)

                                         tGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTc                                                                                              <  1:68175/140‑1 (MQ=255)

                                           cTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCAc                                                                                            >  2:217104/1‑140 (MQ=255)

                                           cTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCAc                                                                                            >  2:1114095/1‑140 (MQ=255)

                                           cTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCAc                                                                                            >  1:592310/1‑140 (MQ=255)

                                                   tAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAata                                                                                    <  1:217104/140‑1 (MQ=255)

                                                     aGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATg                                                                                  >  1:370557/1‑140 (MQ=255)

                                                      gACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGc                                                                                 >  1:1137038/1‑140 (MQ=255)

                                                        cGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCtt                                                                               <  2:370557/140‑1 (MQ=255)

                                                         ggCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTc                                                                              <  1:631724/140‑1 (MQ=255)

                                                         ggCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTc                                                                              <  1:1188119/140‑1 (MQ=255)

                                                          gCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCa                                                                             >  1:382135/1‑140 (MQ=255)

                                                          gCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCa                                                                             >  2:492680/1‑140 (MQ=255)

                                                          gCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCa                                                                             >  2:292962/1‑140 (MQ=255)

                                                             tatTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTa                                                                          <  2:424575/140‑1 (MQ=255)

                                                                   ttttGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTa                                                                    <  1:54693/140‑1 (MQ=255)

                                                                   ttttGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTa                                                                    >  1:396321/1‑140 (MQ=255)

                                                                    tttGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTAt                                                                   <  2:644119/140‑1 (MQ=255)

                                                                      tGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTg                                                                 <  1:1069334/140‑1 (MQ=255)

                                                                         aCCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTc                                                              <  1:996057/140‑1 (MQ=255)

                                                                          ccTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCg                                                             <  1:888847/140‑1 (MQ=255)

                                                                             aaTGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCgtgt                                                          >  2:86871/1‑140 (MQ=255)

                                                                              aTGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTa                                                         <  1:1044116/140‑1 (MQ=255)

                                                                                     aataatGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCatat                                                  >  2:590310/1‑140 (MQ=255)

                                                                                            aCTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCttt                                           >  2:288097/1‑140 (MQ=255)

                                                                                            aCTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCttt                                           >  2:761945/1‑140 (MQ=255)

                                                                                              tATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTa                                         <  1:876112/140‑1 (MQ=255)

                                                                                                ttCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTaaa                                       >  1:424350/1‑140 (MQ=255)

                                                                                                ttCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTaaa                                       >  1:850946/1‑140 (MQ=255)

                                                                                                ttCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTaaa                                       >  1:1035467/1‑140 (MQ=255)

                                                                                                 tCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAAc                                      >  2:634500/1‑140 (MQ=255)

                                                                                                   ttGTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACAt                                    <  2:327892/140‑1 (MQ=255)

                                                                                                     gTATCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTc                                  <  2:240541/140‑1 (MQ=255)

                                                                                                       aTCTCCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCAt                                <  2:424350/140‑1 (MQ=255)

                                                                                                        tctcCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATc                               >  2:54985/1‑140 (MQ=255)

                                                                                                          tcCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGt                             >  1:1052478/1‑140 (MQ=255)

                                                                                                          tcCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGt                             >  1:727322/1‑140 (MQ=255)

                                                                                                          tcCAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGt                             >  1:1119079/1‑140 (MQ=255)

                                                                                                            cAATAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTgg                           <  1:1060059/140‑1 (MQ=255)

                                                                                                             aaTAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTggg                          >  1:428023/1‑140 (MQ=255)

                                                                                                              aTAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTgggg                         <  2:396321/140‑1 (MQ=255)

                                                                                                              aTAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTgggg                         <  1:86871/140‑1 (MQ=255)

                                                                                                               tAAATTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGa                        <  1:634500/140‑1 (MQ=255)

                                                                                                                aaaTTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGAt                       >  2:583517/1‑140 (MQ=255)

                                                                                                                 aaTTCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATg                      <  1:492680/140‑1 (MQ=255)

                                                                                                                   ttCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTgggg                         >  1:438207/1‑135 (MQ=255)

                                                                                                                   ttCTTTTATTTTATCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTgggg                         <  2:438207/135‑1 (MQ=255)

                                                                                                                      ttttattttaTCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTaaa                 <  1:590310/140‑1 (MQ=255)

                                                                                                                         tattttatCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATg              <  2:1011177/140‑1 (MQ=255)

                                                                                                                          attttatCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGa             <  2:850946/140‑1 (MQ=255)

                                                                                                                           ttttatCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGaa            <  1:237404/140‑1 (MQ=255)

                                                                                                                               atCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt        <  1:292962/140‑1 (MQ=255)

                                                                                                                               atCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt        <  1:1114095/140‑1 (MQ=255)

                                                                                                                               atCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt        <  2:256014/140‑1 (MQ=255)

                                                                                                                               atCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt        <  1:148310/140‑1 (MQ=255)

                                                                                                                               atCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt        <  1:288097/140‑1 (MQ=255)

                                                                                                                                tCTTCAACGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTa       <  1:583517/140‑1 (MQ=255)

                                                                                                                                     aaCGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGaa            >  1:468375/1‑130 (MQ=255)

                                                                                                                                     aaCGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGaa            <  2:468375/130‑1 (MQ=255)

                                                                                                                                     aaCGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt        <  1:289673/134‑1 (MQ=255)

                                                                                                                                     aaCGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCt  <  1:761945/140‑1 (MQ=255)

                                                                                                                                     aaCGTCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCt  <  1:882603/140‑1 (MQ=255)

TTTCAAAGTGTGTTTTCACTTCTTGATATATAACTTTTATTTGCTCAAACGTAAGACGGCATATTTTTTTTGCACCTAATGGATTAATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCT  >  NC_000913/3798589‑3798861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A