Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,820,592	(C)_6→7	coding (579/1683 nt)	ligB ←	DNA ligase B

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,820,586	1	.	C	100.0%	188.4 / NA	53	G195G (GGA→GGG)	ligB	DNA ligase B
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (25/28); total (25/28)

GTAGCCAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑CCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCG  >  NC_000913/3820449‑3820718

gTAGCCAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cc                                                                                                                                    <  1:925277/140‑1 (MQ=255)

gTAGCCAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cc                                                                                                                                    <  2:566443/140‑1 (MQ=255)

  aGCCAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccc                                                                                                                                  <  2:456079/140‑1 (MQ=255)

  aGCCAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccc                                                                                                                                  <  2:438470/140‑1 (MQ=255)

   gCCAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccc                                                                                                                                  <  1:350024/139‑1 (MQ=255)

   gCCAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccc                                                                                                                                  >  2:350024/1‑139 (MQ=255)

    ccAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccccc                                                                                                                                >  2:252034/1‑140 (MQ=255)

      aGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑ccccccca                                                                                                                              <  1:670168/140‑3 (MQ=255)

       gCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccccccat                                                                                                                             <  2:1091100/140‑4 (MQ=255)

        ctctTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccccccatt                                                                                                                            >  1:880442/1‑136 (MQ=255)

          ctTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATttg                                                                                                                           <  2:671224/140‑1 (MQ=255)

             ttAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATttgttg                                                                                                                        >  2:626872/1‑140 (MQ=255)

              tAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATttgttgt                                                                                                                       <  1:663757/140‑1 (MQ=255)

              tAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATttgttgt                                                                                                                       <  1:415529/140‑1 (MQ=255)

               aaaCGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATttgttgtt                                                                                                                      <  1:252034/140‑1 (MQ=255)

                     tCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccccccatt                                                                                                                            <  1:213790/127‑5 (MQ=255)

                     tCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑cccccccatt                                                                                                                            >  2:213790/1‑123 (MQ=255)

                          cATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGcccc                                                                                                           <  2:210481/140‑1 (MQ=255)

                           aTTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCt                                                                                                          <  1:626872/140‑1 (MQ=255)

                             tAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTcg                                                                                                        <  1:1156184/140‑1 (MQ=255)

                                  gCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTg                                                                                                   <  2:622165/140‑1 (MQ=255)

                                   cGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTgg                                                                                                  >  1:358139/1‑140 (MQ=255)

                                   cGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTgg                                                                                                  >  2:303154/1‑140 (MQ=255)

                                   cGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTgg                                                                                                  >  1:468944/1‑140 (MQ=255)

                                     gTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGgag                                                                                                <  1:353281/140‑1 (MQ=255)

                                      tCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGgaga                                                                                               >  2:22077/1‑140 (MQ=255)

                                          tCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAata                                                                                           <  2:880442/140‑1 (MQ=255)

                                           ccGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAatat                                                                                          >  1:257018/1‑140 (MQ=255)

                                            cGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATAtt                                                                                         <  2:359973/140‑1 (MQ=255)

                                              gCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTc                                                                                       >  1:112238/1‑140 (MQ=255)

                                                cATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTccc                                                                                     >  1:155299/1‑140 (MQ=255)

                                                   gCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCt                                                                                  <  2:210769/140‑1 (MQ=255)

                                                    cccAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTg                                                                                 <  2:112238/140‑1 (MQ=255)

                                                         aCAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCg                                                                            >  2:510690/1‑140 (MQ=255)

                                                         aCAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCg                                                                            <  1:22077/140‑1 (MQ=255)

                                                           aaaaaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCTTTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTa                                                                          <  1:284581/140‑1 (MQ=255)

                                                           aaaaaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTa                                                                          <  2:468944/140‑1 (MQ=255)

                                                           aaaaaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTa                                                                          <  1:1015821/140‑1 (MQ=255)

                                                              aaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTg                                                                       <  1:344225/140‑1 (MQ=255)

                                                              aaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTg                                                                       <  2:155299/140‑1 (MQ=255)

                                                              aaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTg                                                                       <  2:358139/140‑1 (MQ=255)

                                                                   ccAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGc                                                                  >  1:357260/1‑140 (MQ=255)

                                                                    cAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCt                                                                 <  1:510690/140‑1 (MQ=255)

                                                                              aGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGc                                                       <  1:545877/140‑1 (MQ=255)

                                                                                            gTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGc                                         <  2:257018/140‑1 (MQ=255)

                                                                                             tCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGca                                        >  1:1037335/1‑140 (MQ=255)

                                                                                             tCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGca                                        >  2:669353/1‑140 (MQ=255)

                                                                                                     catcatCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGaa                                >  2:739848/1‑140 (MQ=255)

                                                                                                      atcatcAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGaaa                               >  2:825809/1‑140 (MQ=255)

                                                                                                       tcatcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCGCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAAt                              >  1:234349/1‑140 (MQ=255)

                                                                                                        catcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGca                                        >  2:574270/1‑129 (MQ=255)

                                                                                                        catcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGca                                        <  1:574270/129‑1 (MQ=255)

                                                                                                           caAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAg                          <  2:357260/140‑1 (MQ=255)

                                                                                                           caAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAg                          <  2:1037335/140‑1 (MQ=255)

                                                                                                             aGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCt                        >  2:508844/1‑140 (MQ=255)

                                                                                                                cAGCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAAc                     <  1:439401/140‑1 (MQ=255)

                                                                                                                  gCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACtt                   >  1:379961/1‑140 (MQ=255)

                                                                                                                  gCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACtt                   >  2:575582/1‑140 (MQ=255)

                                                                                                                  gCAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACtt                   >  2:282523/1‑140 (MQ=255)

                                                                                                                   cAACTTTTGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACttt                  >  1:757668/1‑140 (MQ=255)

                                                                                                                        tttGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCg             >  1:765776/1‑140 (MQ=255)

                                                                                                                         ttGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGt            >  1:940729/1‑140 (MQ=255)

                                                                                                                         ttGCGCGGGCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGt            >  1:1013118/1‑140 (MQ=255)

                                                                                                                                ggCATTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTcc     >  1:129625/1‑140 (MQ=255)

                                                                                                                                   aTTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCg  <  2:379961/140‑1 (MQ=255)

                                                                                                                                   aTTTATTCCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCg  <  2:765776/140‑1 (MQ=255)

GTAGCCAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATT‑CCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCG  >  NC_000913/3820449‑3820718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A