Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
129 |
74.0 |
2524844 |
99.2% |
2504645 |
138.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,253,116 |
T→C |
T344A (ACG→GCG) |
nupX ← |
putative nucleoside transporter |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,253,116 | 0 | T | C | 100.0%
| 208.6
/ NA
| 59 | T344A (ACG→GCG) | nupX | putative nucleoside transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (25/34); total (25/34) |
GGCGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGTTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGCCAGCAG > NC_000913/2252982‑2253245
|
ggCGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCa > 1:896081/1‑140 (MQ=255)
ggCGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCa > 1:121334/1‑140 (MQ=255)
cGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGa < 2:375007/140‑1 (MQ=255)
cGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGa < 1:396466/140‑1 (MQ=255)
cGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGa < 2:66565/140‑1 (MQ=255)
cGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGa < 2:687753/140‑1 (MQ=255)
cGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGa < 2:121334/140‑1 (MQ=255)
cGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGa < 1:1087552/140‑1 (MQ=255)
aTTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATa < 1:270965/140‑1 (MQ=255)
ttCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAgg < 1:594383/140‑1 (MQ=255)
ccGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAGGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGt < 2:1245461/140‑1 (MQ=255)
cGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTg < 1:1144322/140‑1 (MQ=255)
gcgcACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTgag < 1:1168396/140‑1 (MQ=255)
tgGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGAt > 1:1180548/1‑140 (MQ=255)
aaCCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGa < 2:395976/140‑1 (MQ=255)
ccGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACa > 1:139198/1‑140 (MQ=255)
ccGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACa > 2:759990/1‑140 (MQ=255)
ccGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACa > 2:254383/1‑140 (MQ=255)
aaaaCGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCa < 1:633331/140‑1 (MQ=255)
aaCGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCAtt > 1:963337/1‑140 (MQ=255)
caccaccCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGtt < 1:655701/140‑1 (MQ=255)
accaccCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGttt < 1:759990/140‑1 (MQ=255)
cGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTg < 2:792134/136‑1 (MQ=255)
cGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTg > 1:792134/1‑136 (MQ=255)
aTAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGcc < 1:1079564/126‑1 (MQ=255)
aTAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGcc > 2:1079564/1‑126 (MQ=255)
gAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCaa < 2:160838/140‑1 (MQ=255)
aaCCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCaaa < 2:1180548/140‑1 (MQ=255)
aCCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAAc > 1:327242/1‑140 (MQ=255)
ccAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTAAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACt > 1:1060183/1‑140 (MQ=255)
aaGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAACATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTccc > 1:686439/1‑140 (MQ=255)
tAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCa > 1:249328/1‑140 (MQ=255)
aGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGc > 1:407098/1‑138 (MQ=255)
aGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGc < 2:407098/138‑1 (MQ=255)
aaaCCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGAtt < 2:686439/140‑1 (MQ=255)
aaaCCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGAtt < 2:249328/140‑1 (MQ=255)
aCCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCg < 1:1106301/140‑1 (MQ=255)
aCCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCg > 2:275213/1‑140 (MQ=255)
cacaACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGAt > 1:578792/1‑133 (MQ=255)
cacaACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGAt < 2:578792/133‑1 (MQ=255)
cacaACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATc > 1:1219773/1‑140 (MQ=255)
acaACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCa < 2:17115/140‑1 (MQ=255)
aCGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAGCTCCCGGCAAGATTCGCATCACTc < 2:384100/140‑1 (MQ=255)
aCGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTc < 2:1189694/140‑1 (MQ=255)
aCGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTc < 2:1219773/140‑1 (MQ=255)
aCGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTAAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTc < 2:1060183/140‑1 (MQ=255)
cgcgAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTcc < 2:1242266/140‑1 (MQ=255)
gAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGt > 2:259866/1‑140 (MQ=255)
gAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGt > 1:142004/1‑140 (MQ=255)
taatCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACAccc > 2:305181/1‑140 (MQ=255)
ccACAGTTTTAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCAcc > 1:165371/1‑140 (MQ=255)
tttAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACgtca < 2:47681/140‑4 (MQ=255)
tttAGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCa < 1:275213/140‑1 (MQ=255)
aGCATCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTg < 1:305181/140‑1 (MQ=255)
tCGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGc > 2:78893/1‑140 (MQ=255)
cGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGcc < 2:921730/140‑1 (MQ=255)
cGAGAGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCACGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGcc > 2:306134/1‑140 (MQ=255)
gagaGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGCca < 2:139198/140‑1 (MQ=255)
gagaGTGCCAGCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGCca > 1:388521/1‑140 (MQ=255)
gCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGCcagcag < 2:578/134‑1 (MQ=255)
gCCGCTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGCcagcag > 1:578/1‑134 (MQ=255)
|
GGCGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGCGAAGGAAATAATCGCCACAGTTTTAGCATCGAGAGTGCCAGCCGTTTGCAGATAGGGTGAGAAATTGAGATAAGCGACAAATTCATTTATTGCCAGTTTCTGTCCAATCAAACTCCCGGCAAGATTCGCATCACTCCAGTCCACACCCATCACCCACGCCAGTGGAGCCAGCAG > NC_000913/2252982‑2253245
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A