Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 129 74.0 2524844 99.2% 2504645 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,660,928 T→C V172A (GTT→GCT)  mdtF → multidrug efflux pump RND permease MdtF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,660,9280TC100.0% 260.5 / NA 74V172A (GTT→GCT) mdtFmultidrug efflux pump RND permease MdtF
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (37/37);  total (37/37)

AGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGG  >  NC_000913/3660795‑3661063
                                                                                                                                     |                                                                                                                                       
aGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAg                                                                                                                                   >  1:1248584/1‑140 (MQ=255)
    tCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTa                                                                                                                               <  1:1012234/140‑1 (MQ=255)
           gTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCg                                                                                                                                 <  2:518835/131‑1 (MQ=255)
           gTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCg                                                                                                                                 >  1:518835/1‑131 (MQ=255)
           gTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAActct                                                                                                                        <  1:95474/140‑1 (MQ=255)
            tCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGTAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCtt                                                                                                                       <  2:270073/140‑1 (MQ=255)
                gCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTa                                                                                                                               <  2:622964/128‑1 (MQ=255)
                gCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTa                                                                                                                               >  1:622964/1‑128 (MQ=255)
                gCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGt                                                                                                                   <  1:572912/140‑1 (MQ=255)
                  aGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTc                                                                                                                 <  2:1257344/140‑1 (MQ=255)
                      atatCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGa                                                                                                              <  1:1217416/139‑1 (MQ=255)
                      atatCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGa                                                                                                              >  2:1217416/1‑139 (MQ=255)
                          ccTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATg                                                                                                         <  1:441266/140‑1 (MQ=255)
                            tGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGcc                                                                                                       >  1:94766/1‑140 (MQ=255)
                              aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTc                                                                                                                 >  1:1007080/1‑128 (MQ=255)
                              aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTc                                                                                                                 <  2:1007080/128‑1 (MQ=255)
                              aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCAt                                                                                                     >  2:569541/1‑140 (MQ=255)
                              aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCAt                                                                                                     >  2:186219/1‑140 (MQ=255)
                              aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCAt                                                                                                     >  2:165162/1‑140 (MQ=255)
                              aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCAt                                                                                                     >  1:230825/1‑140 (MQ=255)
                              aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCAt                                                                                                     >  2:826301/1‑140 (MQ=255)
                              aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCAt                                                                                                     >  1:227385/1‑140 (MQ=255)
                                  tAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGt                                                                                                 >  1:923844/1‑140 (MQ=255)
                                   aGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTa                                                                                                >  2:196627/1‑140 (MQ=255)
                                    gcggcgTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTAt                                                                                               <  2:433745/140‑1 (MQ=255)
                                     cggcgTTTATTTCTGATAACGGCAGCCTCAACCANTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATc                                                                                              >  1:162611/1‑140 (MQ=255)
                                            tATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATctggctgg                                                                                       >  2:624441/1‑140 (MQ=255)
                                                      aaCGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCaaaa                                                                             <  2:227385/140‑1 (MQ=255)
                                                       aCGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCaaaaa                                                                            <  1:165162/140‑1 (MQ=255)
                                                           cAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCa                                                                        <  1:561184/140‑1 (MQ=255)
                                                            aGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaa                                                                       <  2:94766/140‑1 (MQ=255)
                                                            aGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaa                                                                       <  1:186219/140‑1 (MQ=255)
                                                            aGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaa                                                                       <  1:196627/140‑1 (MQ=255)
                                                            aGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaa                                                                       <  2:923844/140‑1 (MQ=255)
                                                             gCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaat                                                                      <  2:230825/140‑1 (MQ=255)
                                                             gCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaat                                                                      <  1:461698/140‑1 (MQ=255)
                                                                  aaCCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaataaata                                                                 <  1:618714/140‑1 (MQ=255)
                                                                  aaCCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaataaata                                                                 <  2:874978/140‑1 (MQ=255)
                                                                  aaCCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaataaata                                                                 <  2:744275/140‑1 (MQ=255)
                                                                  aaCCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaataaata                                                                 <  2:1248584/140‑1 (MQ=255)
                                                                  aaCCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaataaata                                                                 <  2:765681/140‑1 (MQ=255)
                                                                  aaCCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaataaata                                                                 <  2:808925/140‑1 (MQ=255)
                                                                  aaCCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaataaata                                                                 <  1:826301/140‑1 (MQ=255)
                                                                        tACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaa                                                                       >  2:502267/1‑128 (MQ=255)
                                                                        tACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCaa                                                                       <  1:502267/128‑1 (MQ=255)
                                                                        tACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCt                                                           >  2:1178652/1‑140 (MQ=255)
                                                                                    gACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGa                                               <  1:624441/140‑1 (MQ=255)
                                                                                         tGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTc                                                  <  2:1006271/132‑1 (MQ=255)
                                                                                         tGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTc                                                  >  1:1006271/1‑132 (MQ=255)
                                                                                         tGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTa                                          >  1:3916/1‑140 (MQ=255)
                                                                                         tGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTa                                          <  1:1178652/140‑1 (MQ=255)
                                                                                                tCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCa                                   <  1:569541/140‑1 (MQ=255)
                                                                                                 cTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAg                                  >  2:638871/1‑140 (MQ=255)
                                                                                                   aaTATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTc                                      >  1:441535/1‑134 (MQ=255)
                                                                                                   aaTATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTc                                      <  2:441535/134‑1 (MQ=255)
                                                                                                   aaTATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGAt                                >  2:280821/1‑140 (MQ=255)
                                                                                                   aaTATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGAt                                >  1:1236956/1‑140 (MQ=255)
                                                                                                   aaTATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGAt                                >  2:268167/1‑140 (MQ=255)
                                                                                                   aaTATCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGAt                                >  2:885335/1‑140 (MQ=255)
                                                                                                     tatCAAAGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTa                              <  2:162611/140‑1 (MQ=255)
                                                                                                          aaGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTg                         >  2:604478/1‑140 (MQ=255)
                                                                                                          aaGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTg                         >  2:856910/1‑140 (MQ=255)
                                                                                                          aaGACCCGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTg                         >  1:586950/1‑140 (MQ=255)
                                                                                                              cccGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTcc                                     >  2:304595/1‑124 (MQ=255)
                                                                                                              cccGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTcc                                     <  1:304595/124‑1 (MQ=255)
                                                                                                              cccGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTc                                      >  2:770448/1‑123 (MQ=255)
                                                                                                              cccGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTc                                      <  1:770448/123‑1 (MQ=255)
                                                                                                              cccGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCaaa                     >  2:563256/1‑140 (MQ=255)
                                                                                                                cGCTAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAaac                   >  2:932331/1‑140 (MQ=255)
                                                                                                                   tAAGCCGTACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAaacaac                <  2:1236956/140‑1 (MQ=255)
                                                                                                                          tACCGCGGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGAttt         >  2:1028820/1‑140 (MQ=255)
                                                                                                                               cgGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCggt    >  2:204655/1‑140 (MQ=255)
                                                                                                                               cgGGCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCggt    >  1:434041/1‑140 (MQ=255)
                                                                                                                                 ggCGCTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCggtgg  >  2:248086/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                       
AGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTTGGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGG  >  NC_000913/3660795‑3661063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A