Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 129 74.0 2524844 99.2% 2504645 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,812,130 T→C T144A (ACG→GCG)  yicR ← RadC‑like JAB domain‑containing protein YicR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,812,1300TC98.5% 229.9 / ‑4.4 68T144A (ACG→GCG) yicRRadC‑like JAB domain‑containing protein YicR
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (32/35);  total (32/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01

TCAGTAATGAGTTTATCCGCTTTACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGTGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCGGGCTGAGTAAA  >  NC_000913/3811994‑3812260
                                                                                                                                        |                                                                                                                                  
tCAGTAATGAGTTTATCCGCTTTACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGcc                                                                                                                                 >  1:174597/1‑140 (MQ=255)
tCAGTAATGAGTTTATCCGCTTTACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGcc                                                                                                                                 <  1:938321/140‑1 (MQ=255)
             tATCCGCTTTACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGc                                                                                                                    <  2:1090771/140‑1 (MQ=255)
              aTCCGCTTTACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGcc                                                                                                                   >  1:1221275/1‑140 (MQ=255)
                    tttACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCg                                                                                                             >  2:1209030/1‑140 (MQ=255)
                     ttACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGt                                                                                                            >  1:349027/1‑140 (MQ=255)
                      tACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGtt                                                                                                           <  2:36426/140‑1 (MQ=255)
                           ggTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAAc                                                                                                      >  1:116175/1‑140 (MQ=255)
                           ggTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAAc                                                                                                      >  1:729378/1‑140 (MQ=255)
                            gTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAAcc                                                                                                     <  2:8442/140‑1 (MQ=255)
                            gTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAAcc                                                                                                     <  1:954666/140‑1 (MQ=255)
                             ttCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAAccc                                                                                                    <  2:1086674/140‑1 (MQ=255)
                              tCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCg                                                                                                   <  1:1161693/140‑1 (MQ=255)
                              tCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCg                                                                                                   <  2:116175/140‑1 (MQ=255)
                              tCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCg                                                                                                   <  1:582901/140‑1 (MQ=255)
                                aGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGgt                                                                                                 >  2:419048/1‑140 (MQ=255)
                                aGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGgt                                                                                                 >  2:50464/1‑140 (MQ=255)
                                      aCCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTggg                                                                                           <  2:1221275/140‑1 (MQ=255)
                                       cccGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGa                                                                                          >  1:17751/1‑140 (MQ=255)
                                       cccGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGa                                                                                          >  1:586565/1‑140 (MQ=255)
                                        ccGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAg                                                                                         <  2:729378/140‑1 (MQ=255)
                                           aaGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCg                                                                                      <  2:586565/140‑1 (MQ=255)
                                            aGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCga                                                                                     >  2:928487/1‑140 (MQ=255)
                                                  aTTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGa                                                                               >  1:290052/1‑140 (MQ=255)
                                                   ttATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              <  1:50464/140‑1 (MQ=255)
                                                   ttATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              <  1:419048/140‑1 (MQ=255)
                                                   ttATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              <  1:928487/140‑1 (MQ=255)
                                                   ttATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              <  2:174597/140‑1 (MQ=255)
                                                   ttATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              <  1:1209030/140‑1 (MQ=255)
                                                      tgtgCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCAc                                                                           >  2:930580/1‑140 (MQ=255)
                                                       gtgCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCAcc                                                                          <  1:123180/140‑1 (MQ=255)
                                                        tgCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCa                                                                         >  1:663883/1‑140 (MQ=255)
                                                        tgCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCa                                                                         <  1:361604/140‑1 (MQ=255)
                                                         gCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCa                                                                         <  2:409818/139‑1 (MQ=255)
                                                         gCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCa                                                                         >  1:409818/1‑139 (MQ=255)
                                                         gCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCAt                                                                        >  1:57941/1‑140 (MQ=255)
                                                          cAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATa                                                                       >  1:535434/1‑140 (MQ=255)
                                                            aGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCACCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              >  1:197104/1‑131 (MQ=255)
                                                            aGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCACCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              <  2:197104/131‑1 (MQ=255)
                                                             ggATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAg                                                                    <  2:1032412/140‑1 (MQ=255)
                                                              gATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGa                                                                   >  1:766133/1‑140 (MQ=255)
                                                                tCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGAtc                                                                 <  2:57941/140‑1 (MQ=255)
                                                                  aGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              >  1:88422/1‑125 (MQ=255)
                                                                  aGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGAt                                                                              <  2:88422/125‑1 (MQ=255)
                                                                  aGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGAtctc                                                               >  2:299142/1‑140 (MQ=255)
                                                                  aGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGAtctc                                                               >  2:19114/1‑140 (MQ=255)
                                                                  aGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGAtctc                                                               >  1:283637/1‑140 (MQ=255)
                                                                   gcgcCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTcc                                                              <  2:283637/140‑1 (MQ=255)
                                                                   gcgcCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTcc                                                              <  2:766133/140‑1 (MQ=255)
                                                                   gcgcCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTcc                                                              <  2:349027/140‑1 (MQ=255)
                                                                     gcCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCg                                                            <  1:299142/140‑1 (MQ=255)
                                                                          ggCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGctcct                                                       <  2:1051845/140‑1 (MQ=255)
                                                                                             tCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTg                                    >  1:290702/1‑140 (MQ=255)
                                                                                              cgcgGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGt                                   >  2:860792/1‑140 (MQ=255)
                                                                                                          cccGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTc                       >  1:614749/1‑140 (MQ=255)
                                                                                                            cGAGGATGGACTTCAACATGGTTTAGCGTGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGt                     <  1:1171904/140‑1 (MQ=255)
                                                                                                            cGAGGATGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGt                     <  2:290052/140‑1 (MQ=255)
                                                                                                                 aTGGACTTCAACATGGTTTAGCGCGCCGGAAACAAGACGCCTATGTGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTTCCTCGTCAtct                >  2:302289/1‑140 (MQ=255)
                                                                                                                 aTGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCAtct                >  2:562752/1‑140 (MQ=255)
                                                                                                                  tGGACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCAtctc               >  2:378807/1‑140 (MQ=255)
                                                                                                                   ggACTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTcc              <  1:930580/140‑1 (MQ=255)
                                                                                                                      cTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCggg           <  2:453298/140‑1 (MQ=255)
                                                                                                                      cTTCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCggg           <  2:663883/140‑1 (MQ=255)
                                                                                                                       ttCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCGGGc          <  2:259914/140‑1 (MQ=255)
                                                                                                                        tCAACATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCGGGCt         >  2:302118/1‑140 (MQ=255)
                                                                                                                          aaCATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCGGGCTGa       >  2:802066/1‑140 (MQ=255)
                                                                                                                            cATGGTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCGGGCTGAGt     <  2:290702/140‑1 (MQ=255)
                                                                                                                               ggTTTAGCGCGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCGGGCTGAGTaaa  >  1:1146193/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                  
TCAGTAATGAGTTTATCCGCTTTACTGGGTTCAGCACAACCCGAAGGGTGATTATGTGCAAGGATCAGCGCCGAGGCGTTTATTTTTATCGCTTCGCGGATAATTTCCCGAGGATGGACTTCAACATGGTTTAGCGTGCCGGAAAAAAGACGCCTATGCGTTATAACCCGGTGTTGGGAGTCGAGAAAGATCACCATAAAGATCTCCCGCTCCTCACCCGTGAGCTGGCTTTGTAAAAATTCCCTCGTCATCTCCGGGCTGAGTAAA  >  NC_000913/3811994‑3812260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A