Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 126 206.4 6980590 99.2% 6924745 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,958,123 (T)6→5 coding (10/1101 nt) torY ← cytochrome c quinol dehydrogenase TorY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,958,1180T.96.0% 671.5 / 22.5 174coding (15/1101 nt)torYcytochrome c quinol dehydrogenase TorY
Reads supporting (aligned to +/- strand):  ref base T (4/3);  new base . (71/96);  total (75/99)
Fisher's exact test for biased strand distribution p-value = 4.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 210 total aligned reads displayed.

TTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGATT  >  NC_000913/1957980‑1958251
                                                                                                                                          |                                                                                                                                     
ttCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtt                                                                                                                                      >  1:2188994/1‑140 (MQ=255)
ttCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtt                                                                                                                                      >  2:623839/1‑140 (MQ=255)
ttCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtt                                                                                                                                      >  2:579711/1‑140 (MQ=255)
ttCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtt                                                                                                                                      >  1:2097151/1‑140 (MQ=255)
ttCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtt                                                                                                                                      >  1:2725683/1‑140 (MQ=255)
ttCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtt                                                                                                                                      >  2:3202663/1‑140 (MQ=255)
  ccTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttt                                                                                                                                    >  1:1049713/1‑140 (MQ=255)
  ccTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttt                                                                                                                                    >  1:1934682/1‑140 (MQ=255)
   cTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGttttt                                                                                                                                   >  2:1393910/1‑140 (MQ=255)
   cTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGttttt                                                                                                                                   >  1:281451/1‑140 (MQ=255)
   cTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGttttt                                                                                                                                   >  2:1087572/1‑140 (MQ=255)
     cAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttcc                                                                                                                                 <  1:743784/140‑3 (MQ=255)
     cAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttcc                                                                                                                                 <  2:273541/140‑3 (MQ=255)
     cAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttcc                                                                                                                                 >  1:1241465/1‑138 (MQ=255)
       aaaGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttccct                                                                                                                               <  1:3232144/140‑5 (MQ=255)
       aaaGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttccct                                                                                                                               <  1:2273625/140‑5 (MQ=255)
       aaaGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTccc                                                                                                                                >  1:317752/1‑139 (MQ=255)
           gTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCa                                                                                                                          <  2:1049713/140‑1 (MQ=255)
             ttACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttcc                                                                                                                                 >  2:1288666/1‑130 (MQ=255)
             ttACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttcc                                                                                                                                 <  1:1288666/132‑3 (MQ=255)
             ttACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATa                                                                                                                        >  2:2617892/1‑140 (MQ=255)
               aCTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGa                                                                                                                      <  1:3482738/140‑1 (MQ=255)
               aCTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAACAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGa                                                                                                                      >  2:2471813/1‑140 (MQ=255)
                cTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTccc                                                                                                                                >  1:3402392/1‑130 (MQ=255)
                  cATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTc                                                                                                                   <  2:173639/140‑1 (MQ=255)
                   aTCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGtttttcc                                                                                                                                 >  2:2272876/1‑124 (MQ=255)
                     cGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGTAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTccc                                                                                                                                <  1:626464/125‑1 (MQ=255)
                     cGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCctc                                                                                                                >  1:349613/1‑140 (MQ=255)
                     cGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCctc                                                                                                                >  2:2939532/1‑140 (MQ=255)
                     cGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCctc                                                                                                                <  1:1759280/140‑1 (MQ=255)
                     cGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCct                                                                                                                 >  2:1569571/1‑139 (MQ=255)
                           gCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGc                                                                                                                           <  1:734315/123‑1 (MQ=255)
                             aGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCa                                                                                                                          <  2:2008458/122‑1 (MQ=255)
                              ggAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTaattaaat                                                                                                       >  2:490108/1‑140 (MQ=255)
                                 aaGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTAc                                                                                                    >  1:3141186/1‑140 (MQ=255)
                                   ggCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTg                                                                                                  >  2:222789/1‑140 (MQ=255)
                                    gCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTgg                                                                                                 <  1:3060372/140‑1 (MQ=255)
                                    gCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTgg                                                                                                 >  1:2229136/1‑140 (MQ=255)
                                    gCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTgg                                                                                                 >  2:2607104/1‑140 (MQ=255)
                                     cAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAATCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTaatta                                                                                                          >  2:2912100/1‑130 (MQ=255)
                                     cAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAATCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTaatta                                                                                                          <  1:2912100/130‑1 (MQ=255)
                                         aTGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACAcc                                                                                            >  2:2815221/1‑140 (MQ=255)
                                           gCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGa                                                                                          <  2:192207/140‑1 (MQ=255)
                                           gCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGa                                                                                          <  2:463930/140‑1 (MQ=255)
                                             tGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGaaa                                                                                        >  2:2667504/1‑140 (MQ=255)
                                             tGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGaaa                                                                                        >  2:3484219/1‑140 (MQ=255)
                                              gTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGa                                                                                          >  1:1167167/1‑137 (MQ=255)
                                              gTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGa                                                                                          <  2:1167167/137‑1 (MQ=255)
                                              gTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAAt                                                                                       >  2:3156836/1‑140 (MQ=255)
                                               tATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGa                                                                                                >  2:835938/1‑130 (MQ=255)
                                                aTCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCa                                                                                     <  1:2667504/140‑1 (MQ=255)
                                                aTCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCa                                                                                     <  1:1393910/140‑1 (MQ=255)
                                                    gACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGt                                                                                 >  1:1778125/1‑140 (MQ=255)
                                                     aCGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGta                                                                                <  1:1618374/140‑1 (MQ=255)
                                                      cGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCg                                                                                           <  1:1453925/128‑1 (MQ=255)
                                                      cGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCg                                                                                           >  2:1453925/1‑128 (MQ=255)
                                                      cGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGaa                                                                                         <  1:481377/130‑1 (MQ=255)
                                                      cGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGaa                                                                                         >  2:481377/1‑130 (MQ=255)
                                                       gTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGtata                                                                              <  1:526155/140‑1 (MQ=255)
                                                       gTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGtata                                                                              <  1:87423/140‑1 (MQ=255)
                                                         tttATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAAt                                                                            >  2:2999596/1‑140 (MQ=255)
                                                         tttATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAAt                                                                            <  2:694772/140‑1 (MQ=255)
                                                          ttATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAAtt                                                                           <  2:1240890/140‑1 (MQ=255)
                                                                aaGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAatat                                                                     >  1:1104589/1‑140 (MQ=255)
                                                                  gACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTg                                                                                  >  2:627097/1‑125 (MQ=255)
                                                                  gACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATAc                                                                   <  1:1556077/140‑1 (MQ=255)
                                                                  gACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATAc                                                                   >  2:2361915/1‑140 (MQ=255)
                                                                   aCTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACa                                                                  >  2:2711026/1‑140 (MQ=255)
                                                                    cTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACaa                                                                 <  2:2754624/140‑1 (MQ=255)
                                                                          gcgcCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAAtt                                                           >  2:2137568/1‑140 (MQ=255)
                                                                                gCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGc                                                     <  2:2107516/140‑1 (MQ=255)
                                                                                gCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGc                                                     <  1:1159576/140‑1 (MQ=255)
                                                                                     aaCCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCa                                                <  2:2498161/140‑1 (MQ=255)
                                                                                         cgccgcCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACG‑ATTAACCGCTTGCATAAtt                                           <  1:1087572/140‑1 (MQ=255)
                                                                                          gccgccACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAAtt                                           <  2:2097151/140‑1 (MQ=255)
                                                                                           ccgccACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTa                                          >  1:2474205/1‑140 (MQ=255)
                                                                                           ccgccACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTa                                          >  1:1733513/1‑140 (MQ=255)
                                                                                           ccgccACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTa                                          >  2:1659962/1‑140 (MQ=255)
                                                                                           ccgccACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTa                                          >  2:3124537/1‑140 (MQ=255)
                                                                                            cgccACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAAtt                                           <  1:2148038/138‑1 (MQ=255)
                                                                                             gccACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAgg                                        <  2:1104589/140‑1 (MQ=255)
                                                                                              ccaccaACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGc                                       <  2:3063855/140‑1 (MQ=255)
                                                                                               caccaACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGca                                      <  1:1659962/140‑1 (MQ=255)
                                                                                               caccaACCACAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGca                                      <  2:140618/140‑1 (MQ=255)
                                                                                                  caaccaCAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCacaa                                   >  1:1431384/1‑140 (MQ=255)
                                                                                                    accaCAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCacaaca                                 <  1:1810774/140‑1 (MQ=255)
                                                                                                    accaCAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCacaaca                                 <  2:742094/140‑1 (MQ=255)
                                                                                                    accaCAACCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCacaaca                                 <  1:2566678/140‑1 (MQ=255)
                                                                                                         aaCCGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGcc                            <  2:2545866/140‑1 (MQ=255)
                                                                                                           ccGCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTg                          >  2:1520479/1‑140 (MQ=255)
                                                                                                             gCTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGaa                        >  1:1201626/1‑140 (MQ=255)
                                                                                                              cTATCAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGaaa                       >  1:2528360/1‑140 (MQ=255)
                                                                                                                  cAGCAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAAt                   <  1:3006875/140‑1 (MQ=255)
                                                                                                                     cAAAAACAATAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGa                >  2:1807356/1‑140 (MQ=255)
                                                                                                                              tAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAata       <  2:3375116/140‑1 (MQ=255)
                                                                                                                              tAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAata       <  1:1386801/140‑1 (MQ=255)
                                                                                                                              tAACCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAata       <  1:579711/140‑1 (MQ=255)
                                                                                                                               aaCCCAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATa              <  2:1828927/132‑1 (MQ=255)
                                                                                                                                  ccAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGAt   <  2:216124/140‑1 (MQ=255)
                                                                                                                                   cAATGCG‑TTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGAtt  <  2:3012697/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                     
TTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAAAATGCTGTATCCGACGTTTTATGTAAGACTTTTTGCGCCAGCAATAACCCGCCGCCACCAACCACAACCGCTATCAGCAAAAACAATAACCCAATGCGTTTTTTCCCTCGCATAGATTCCTCTAATTAAATTACTGGACACCGAAATCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGATT  >  NC_000913/1957980‑1958251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A