Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 126 206.4 6980590 99.2% 6924745 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,770,066 A→G intergenic (+386/+177) yibV → / ← yibH PF15596 family protein YibV/inner membrane protein YibH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,770,0660AG100.0% 957.2 / NA 260intergenic (+386/+177)yibV/yibHPF15596 family protein YibV/inner membrane protein YibH
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (117/143);  total (117/143)

Only 100 of 269 total aligned reads displayed.

TAAATATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGATGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAG  >  NC_000913/3769930‑3770201
                                                                                                                                        |                                                                                                                                       
tAAATATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGgtgt                                                                                                                                      >  2:2491297/1‑140 (MQ=255)
 aaaTATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGGTGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGta                                                                                                                                     <  2:3286253/140‑1 (MQ=255)
 aaaTATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGta                                                                                                                                     <  1:1532462/140‑1 (MQ=255)
 aaaTATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGta                                                                                                                                     <  2:128212/140‑1 (MQ=255)
 aaaTATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGta                                                                                                                                     <  1:1636238/140‑1 (MQ=255)
 aaaTATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGta                                                                                                                                     <  1:1007968/140‑1 (MQ=255)
 aaaTATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGta                                                                                                                                     <  1:2868290/140‑1 (MQ=255)
   atatTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGgtgt                                                                                                                                      >  2:419204/1‑137 (MQ=255)
   atatTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGgtgt                                                                                                                                      <  1:419204/137‑1 (MQ=255)
   atatTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGtata                                                                                                                                   >  2:1790444/1‑140 (MQ=255)
         tttAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCa                                                                                                                             <  1:869476/140‑1 (MQ=255)
                   aCTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCa                                                                                                                   >  2:93092/1‑140 (MQ=255)
                         aTCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACaa                                                                                                             <  1:2491297/140‑1 (MQ=255)
                          tCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAg                                                                                                            >  2:1108461/1‑140 (MQ=255)
                          tCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAg                                                                                                            <  1:2821540/140‑1 (MQ=255)
                            cTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGAc                                                                                                          <  2:743372/140‑1 (MQ=255)
                            cTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGAc                                                                                                          <  2:576969/140‑1 (MQ=255)
                               cAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGAc                                                                                                          <  2:3003759/137‑1 (MQ=255)
                               cAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGa                                                                                                       >  1:43225/1‑140 (MQ=255)
                                 gATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACg                                                                                                         <  2:1377245/136‑1 (MQ=255)
                                 gATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACg                                                                                                         >  1:1377245/1‑136 (MQ=255)
                                 gATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATa                                                                                                     >  1:2188732/1‑140 (MQ=255)
                                 gATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATa                                                                                                     >  1:693013/1‑140 (MQ=255)
                                 gATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATa                                                                                                     >  2:2563749/1‑140 (MQ=255)
                                  ataataAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATaa                                                                                                    <  1:2901932/140‑1 (MQ=255)
                                     ataaAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATaaaaa                                                                                                 >  1:2968853/1‑140 (MQ=255)
                                      taaAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCGGAACAAGACGGATaaaaaa                                                                                                >  2:2635218/1‑140 (MQ=255)
                                      taaAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGAc                                                                                                          >  2:3185446/1‑130 (MQ=255)
                                      taaAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGAc                                                                                                          <  1:3185446/130‑1 (MQ=255)
                                      taaAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATaaaaaa                                                                                                >  1:3050001/1‑140 (MQ=255)
                                       aaaGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATaa                                                                                                    <  2:2022053/135‑1 (MQ=255)
                                       aaaGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATaa                                                                                                    >  1:2022053/1‑135 (MQ=255)
                                         aGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATcc                                                                                             <  2:2310644/140‑1 (MQ=255)
                                           ccATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCaa                                                                                           <  2:1586294/140‑1 (MQ=255)
                                            catcatCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAAt                                                                                          >  2:2140526/1‑140 (MQ=255)
                                            catcatCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAAt                                                                                          <  2:1436922/140‑1 (MQ=255)
                                            catcatCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAAt                                                                                          <  2:2188732/140‑1 (MQ=255)
                                            catcatCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAAt                                                                                          >  1:2219831/1‑140 (MQ=255)
                                            catcatCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAAt                                                                                          <  1:1122158/140‑1 (MQ=255)
                                            catcatCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAAt                                                                                          <  1:2563749/140‑1 (MQ=255)
                                                 tcGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGagag                                                                                     <  2:479311/140‑1 (MQ=255)
                                                 tcGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGagag                                                                                     <  2:43225/140‑1 (MQ=255)
                                                 tcGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGagag                                                                                     <  1:129259/140‑1 (MQ=255)
                                                   gCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGca                                                                                   <  1:3318663/140‑1 (MQ=255)
                                                   gCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGca                                                                                   <  2:1166509/140‑1 (MQ=255)
                                                     aaTAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGcaca                                                                                 <  2:3050001/140‑1 (MQ=255)
                                                      aTAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCacac                                                                                <  2:1753070/140‑1 (MQ=255)
                                                          aTGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCacac                                                                                >  2:3134074/1‑136 (MQ=255)
                                                          aTGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCacac                                                                                <  1:3134074/136‑1 (MQ=255)
                                                          aTGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCAt                                                                            >  2:902871/1‑140 (MQ=255)
                                                           tGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATc                                                                           <  2:3099156/140‑1 (MQ=255)
                                                           tGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATc                                                                           <  2:2207286/140‑1 (MQ=255)
                                                           tGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATc                                                                           <  2:1952713/140‑1 (MQ=255)
                                                            ggAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGCCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATcc                                                                          >  2:29661/1‑140 (MQ=255)
                                                              aaaaGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATGGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAg                                                                        <  1:1988641/140‑1 (MQ=255)
                                                              aaaaGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAg                                                                        <  2:2814389/140‑1 (MQ=255)
                                                              aaaaGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAg                                                                        <  2:2807490/140‑1 (MQ=255)
                                                              aaaaGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAg                                                                        <  2:2547179/140‑1 (MQ=255)
                                                               aaaGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGa                                                                       >  1:1056535/1‑140 (MQ=255)
                                                                 aGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAAc                                                                     >  1:2808517/1‑140 (MQ=255)
                                                                 aGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAAc                                                                     >  2:1490154/1‑140 (MQ=255)
                                                                 aGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAAc                                                                     >  1:3443868/1‑140 (MQ=255)
                                                                   cACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACtt                                                                   >  1:1853913/1‑140 (MQ=255)
                                                                   cACTCCTGCTCTTTTTTGATTAGAGCCATCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGagag                                                                                     <  1:2371776/122‑1 (MQ=255)
                                                                    aCTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACtta                                                                  >  2:1877178/1‑140 (MQ=255)
                                                                     cTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACttat                                                                 >  1:986959/1‑140 (MQ=255)
                                                                     cTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACttat                                                                 >  1:2703787/1‑140 (MQ=255)
                                                                          gCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACa                                                            >  1:482441/1‑140 (MQ=255)
                                                                              ttttttGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAAt                                                        <  2:2254467/140‑1 (MQ=255)
                                                                                ttttGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGa                                                      >  1:551658/1‑140 (MQ=255)
                                                                                    gATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAatat                                                  <  2:762720/140‑1 (MQ=255)
                                                                                     aTTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATAtt                                                 <  2:2261922/140‑1 (MQ=255)
                                                                                            ccGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGaaa                                          <  1:2654430/140‑1 (MQ=255)
                                                                                               tCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAat                                       >  2:2372822/1‑140 (MQ=255)
                                                                                                  cAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAatcat                                    <  1:2525622/140‑1 (MQ=255)
                                                                                                  cAGGAGGAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAatcat                                    <  2:625272/140‑1 (MQ=255)
                                                                                                   aggaggAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCGGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAatcatc                                   <  1:2635218/140‑1 (MQ=255)
                                                                                                   aggaggAACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAatcatc                                   <  1:1790444/140‑1 (MQ=255)
                                                                                                    ggaggaACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCg                                  >  2:138686/1‑140 (MQ=255)
                                                                                                      aggaACAACTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGaa                                <  2:2665746/140‑1 (MQ=255)
                                                                                                         aacaacTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGa                                 <  1:2120366/136‑1 (MQ=255)
                                                                                                          acaacTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGc                              >  2:2609238/1‑138 (MQ=255)
                                                                                                          acaacTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGc                              <  1:2609238/138‑1 (MQ=255)
                                                                                                          acaacTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTa                            <  2:565512/140‑1 (MQ=255)
                                                                                                          acaacTCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTa                            <  2:447202/140‑1 (MQ=255)
                                                                                                               tCATATCATCATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGaa                       >  2:3370210/1‑140 (MQ=255)
                                                                                                                   atcatcATTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAg                               <  1:145016/128‑1 (MQ=255)
                                                                                                                      atcatTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAatat                <  2:2860389/140‑1 (MQ=255)
                                                                                                                      atcatTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAatat                >  2:3480526/1‑140 (MQ=255)
                                                                                                                       tcatTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATg               <  1:756980/140‑1 (MQ=255)
                                                                                                                        catTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGc              >  2:1711800/1‑140 (MQ=255)
                                                                                                                         atTGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATg                         >  1:2261101/1‑128 (MQ=255)
                                                                                                                           tGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCaaa           <  1:2295583/140‑1 (MQ=255)
                                                                                                                           tGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCaaa           <  1:955930/140‑1 (MQ=255)
                                                                                                                           tGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCaaa           <  2:104666/140‑1 (MQ=255)
                                                                                                                           tGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCaaa           <  1:1561199/140‑1 (MQ=255)
                                                                                                                           tGCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCa             <  1:575426/138‑1 (MQ=255)
                                                                                                                            gCGATCTCGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCaaaa          <  1:1886762/140‑1 (MQ=255)
                                                                                                                                 ctcGACGGTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAaataat     >  1:2793509/1‑140 (MQ=255)
                                                                                                                                    gacggTGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAg  <  1:1711800/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TAAATATTTTTTAAATGTGACTGTCATCCTTCAGATAATAAAGCCATCATCGCAATAGATGGAAAAGCACTCCTGCTCTTTTTTGATTAGAGCCGTCGCAGGAGGAACAACTCATATCATCATTGCGATCTCGACGATGTATAGTCTCATCCTGCGGCAGAACAAGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAG  >  NC_000913/3769930‑3770201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A