Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
252 |
48.5 |
1661298 |
98.8% |
1641362 |
138.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,841,011 |
T→C |
A131A (GCA→GCG) |
ynjF ← |
putative phosphatidyl transferase, inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,841,011 | 0 | T | C | 100.0%
| 173.1
/ NA
| 50 | A131A (GCA→GCG) | ynjF | putative phosphatidyl transferase, inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/22); total (28/22) |
GCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGA > NC_000913/1840880‑1841145
|
gcaaaccaTGCAGGGAATAAACATCCCAGCACAAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCaaa > 2:238888/1‑140 (MQ=255)
aaccaTGCAGGGAATAAACATCCCAGCACAAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGc < 2:667435/140‑1 (MQ=255)
gCACAAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATa < 2:711304/140‑1 (MQ=255)
aaCAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGc < 2:294983/140‑1 (MQ=255)
aCAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGc < 1:302954/139‑1 (MQ=255)
aCAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGc > 2:302954/1‑139 (MQ=255)
aCAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCa < 2:283773/140‑1 (MQ=255)
aaGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAaacaa > 2:554433/1‑140 (MQ=255)
cGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAAcc > 1:777328/1‑140 (MQ=255)
tttCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAg > 2:678987/1‑140 (MQ=255)
tttCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAg > 1:501531/1‑140 (MQ=255)
gtgCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAgccgcc < 2:501531/140‑1 (MQ=255)
tgCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCt > 2:71870/1‑140 (MQ=255)
gCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTg < 1:71119/140‑1 (MQ=255)
tCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTg > 1:800453/1‑136 (MQ=255)
tCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTg < 2:800453/136‑1 (MQ=255)
tCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAg > 2:351599/1‑140 (MQ=255)
cGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAgc < 2:777328/140‑1 (MQ=255)
tAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCAt > 1:404855/1‑140 (MQ=255)
tCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCAtttt > 2:551921/1‑140 (MQ=255)
cccAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGc > 1:656323/1‑125 (MQ=255)
cccAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGc < 2:656323/125‑1 (MQ=255)
cAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCg > 2:97217/1‑140 (MQ=255)
gATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGt < 1:551921/140‑1 (MQ=255)
gATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGt < 2:404855/140‑1 (MQ=255)
gACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAAt < 1:713173/140‑1 (MQ=255)
cTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATaa > 2:448830/1‑140 (MQ=255)
tATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTgc < 2:822756/127‑1 (MQ=255)
tATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTgc > 1:822756/1‑127 (MQ=255)
tATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTg > 1:803712/1‑126 (MQ=255)
tATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTg < 2:803712/126‑1 (MQ=255)
tAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGc < 2:258417/133‑1 (MQ=255)
tAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGc > 1:258417/1‑133 (MQ=255)
aaCCGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGc > 1:435438/1‑140 (MQ=255)
cGGGGTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCAcc > 2:7327/1‑140 (MQ=255)
ggTTATCAATCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAgc < 2:220488/140‑1 (MQ=255)
aTCAACCTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGt > 1:614899/1‑140 (MQ=255)
cTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAaga > 1:371391/1‑140 (MQ=255)
cTGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAaga > 1:318481/1‑140 (MQ=255)
tGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAgc < 2:272925/129‑1 (MQ=255)
tGATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAgc > 1:272925/1‑129 (MQ=255)
gATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCa > 2:675131/1‑126 (MQ=255)
gATGTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCa < 1:675131/126‑1 (MQ=255)
gTTTTGCTGCCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGaaaa > 1:511955/1‑140 (MQ=255)
tgctgcCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCga < 2:371391/140‑1 (MQ=255)
tgctgcCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCga > 1:121786/1‑140 (MQ=255)
tgctgcCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCga > 1:205164/1‑140 (MQ=255)
ctgcCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgaga > 2:481837/1‑140 (MQ=255)
tgcCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgagag < 2:511955/140‑1 (MQ=255)
gcCAGCGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgagaga < 2:205164/140‑1 (MQ=255)
|
GCAAACCATGCAGGGAATAAACATCCCAGCACAAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGA > NC_000913/1840880‑1841145
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
