Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 252 48.5 1661298 98.8% 1641362 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,401,970 T→C H28R (CAC→CGC)  nuoE ← NADH:quinone oxidoreductase subunit E

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,401,9700TC100.0% 243.0 / NA 69H28R (CAC→CGC) nuoENADH:quinone oxidoreductase subunit E
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (26/43);  total (26/43)

GCCACACCTTCGACGTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGTGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTGCCCAGATAA  >  NC_000913/2401835‑2402100
                                                                                                                                       |                                                                                                                                  
gCCACACCTTCGACGTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAgcggtg                                                                                                                                <  1:341874/140‑1 (MQ=255)
 ccACACCTTCGACGTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGc                                                                                                                               >  2:794560/1‑140 (MQ=255)
         tCGACGTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTg                                                                                                                       >  1:644282/1‑140 (MQ=255)
         tCGACGTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTg                                                                                                                       >  2:22909/1‑140 (MQ=255)
         tCGACGTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTg                                                                                                                       >  2:504165/1‑140 (MQ=255)
         tCGACGTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTg                                                                                                                       >  1:260213/1‑140 (MQ=255)
              gTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGa                                                                                                                  <  2:644282/140‑1 (MQ=255)
               tCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGAt                                                                                                                 <  2:807124/140‑1 (MQ=255)
               tCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGAt                                                                                                                 <  1:676665/140‑1 (MQ=255)
                 gCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCg                                                                                                               >  1:237381/1‑140 (MQ=255)
                 gCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTACTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCg                                                                                                               >  2:112111/1‑140 (MQ=255)
                   ttGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCt                                                                                                             <  2:536277/140‑1 (MQ=255)
                   ttGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCt                                                                                                             <  1:486319/140‑1 (MQ=255)
                    tGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCtt                                                                                                            >  1:399112/1‑140 (MQ=255)
                      ccGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCa                                                                                                          <  1:532343/140‑1 (MQ=255)
                      ccGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCa                                                                                                          <  1:794762/140‑1 (MQ=255)
                      ccGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCa                                                                                                          <  1:498501/140‑1 (MQ=255)
                      ccGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCa                                                                                                          <  1:332751/140‑1 (MQ=255)
                        ggAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACg                                                                                                        <  2:558668/140‑1 (MQ=255)
                          aaTCCCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGct                                                                                                      <  2:561168/140‑1 (MQ=255)
                          aaTACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGct                                                                                                      <  2:413308/140‑1 (MQ=255)
                          aaTACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGct                                                                                                      <  2:582796/140‑1 (MQ=255)
                                 aGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGct                                                                                                      >  2:56359/1‑133 (MQ=255)
                                 aGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGct                                                                                                      <  1:56359/133‑1 (MQ=255)
                                   cacaTCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGct                                                                                                      >  2:270071/1‑131 (MQ=255)
                                   cacaTCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGct                                                                                                      <  1:270071/131‑1 (MQ=255)
                                   cacaTCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGcc                                                                                                 <  1:127738/136‑1 (MQ=255)
                                   cacaTCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGcc                                                                                                 >  2:127738/1‑136 (MQ=255)
                                    acaTCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACt                                                                                            <  2:724789/140‑1 (MQ=255)
                                        cGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGc                                                                                        >  2:267902/1‑140 (MQ=255)
                                        cGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTACATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGc                                                                                        >  1:162079/1‑140 (MQ=255)
                                             aTCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCaaa                                                                                   >  2:253963/1‑140 (MQ=255)
                                                  gTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCt                                                                              <  1:504165/140‑1 (MQ=255)
                                                  gTGGATCGCACCATCCGGCACCCAGCCACGCTACTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCt                                                                              <  1:112111/140‑1 (MQ=255)
                                                     gATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCgg                                                                           <  2:237381/140‑1 (MQ=255)
                                                        cGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGttt                                                                        >  1:601021/1‑140 (MQ=255)
                                                          cACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTtgt                                                                      >  2:191424/1‑140 (MQ=255)
                                                          cACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTtgt                                                                      >  2:613717/1‑140 (MQ=255)
                                                          cACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTtgt                                                                      >  2:188087/1‑140 (MQ=255)
                                                            ccATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTgg                                                                    <  1:22909/140‑1 (MQ=255)
                                                            ccATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTgg                                                                    <  1:267902/140‑1 (MQ=255)
                                                               tCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGcc                                                                               >  1:802998/1‑126 (MQ=255)
                                                               tCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGcc                                                                               <  2:802998/126‑1 (MQ=255)
                                                                ccGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGgttgt                                                                >  2:239785/1‑140 (MQ=255)
                                                                   gCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGa                                                             <  1:253963/140‑1 (MQ=255)
                                                                     aCCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGAtt                                                           <  1:191424/140‑1 (MQ=255)
                                                                     aCCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGAtt                                                           <  1:239785/140‑1 (MQ=255)
                                                                       ccAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATtct                                                         <  1:188087/140‑1 (MQ=255)
                                                                       ccAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATtct                                                         <  2:665796/140‑1 (MQ=255)
                                                                                    ttCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAg                                            <  2:809752/140‑1 (MQ=255)
                                                                                     tCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGc                                           >  2:200540/1‑140 (MQ=255)
                                                                                      cTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCg                                          <  1:282065/140‑1 (MQ=255)
                                                                                         aaCGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTc                                       <  2:479960/140‑1 (MQ=255)
                                                                                             aTTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCcaca                                   >  1:813146/1‑140 (MQ=255)
                                                                                                ttCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCcaca                                   >  2:483089/1‑137 (MQ=255)
                                                                                                ttCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCcaca                                   <  1:483089/137‑1 (MQ=255)
                                                                                                    gcgcTTCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACa                            <  1:613717/140‑1 (MQ=255)
                                                                                                        ttCAATGGACGCCGCACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAAc                        <  1:307022/140‑1 (MQ=255)
                                                                                                                  gccgcACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATa              >  2:323583/1‑140 (MQ=255)
                                                                                                                  gccgcACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATa              <  2:260213/140‑1 (MQ=255)
                                                                                                                    cgcACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACa                            <  2:98313/124‑1 (MQ=255)
                                                                                                                    cgcACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACa                            >  1:98313/1‑124 (MQ=255)
                                                                                                                    cgcACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACt            >  1:33617/1‑140 (MQ=255)
                                                                                                                     gcACGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTg           <  1:200540/140‑1 (MQ=255)
                                                                                                                     gcACGCGGGTCTTCGTAGCGGTACATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTg           <  2:162079/140‑1 (MQ=255)
                                                                                                                       aCGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTGcc         <  2:601021/140‑1 (MQ=255)
                                                                                                                       aCGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTGcc         <  1:794560/140‑1 (MQ=255)
                                                                                                                       aCGCGGGTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTGcc         <  2:813146/140‑1 (MQ=255)
                                                                                                                             gTCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTGCCCAGATa   <  2:399112/140‑1 (MQ=255)
                                                                                                                              tCTTCGTAGCGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTGCCCAGATaa  <  1:118415/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                  
GCCACACCTTCGACGTCGCTTGCCGGAATACCCAGCACATCGGCGATCGCGTGGATCGCACCATCCGGCACCCAGCCACGCTGCTTCTGAACGATTTTCAGCGCTTCAATGGACGCCGCACGCGGGTCTTCGTAGTGGTGCATCTCGTGCTCGATCGCTTCACGCTCTGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGTTGATTCTCGTGCATAATTAGCGGTCCACATCTGACATAACAAAATCGATACTGCCCAGATAA  >  NC_000913/2401835‑2402100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A