Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	145	97.8	3401598	99.2%	3374385	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,812,360	Δ1 bp	coding (773/804 nt)	ydjO ←	protein YdjO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,812,357	0	G	.	100.0%	213.6 / NA	51	coding (776/804 nt)	ydjO	protein YdjO
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (24/27); total (24/27)

TAGTGGCTCGATGACAGCTGGCACGCTGACCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATAGGGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCAATGAATGTGCCTGTAGCGAGA  >  NC_000913/1812223‑1812489

tAGTGGCTCGATGACAGCTGGCACGCTGACCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATAgggccg                                                                                                                                 <  1:1420170/140‑4 (MQ=255)

tAGTGGCTCGATGACAGCTGGCACGCTGACCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATAgggccg                                                                                                                                 >  1:132729/1‑137 (MQ=255)

tAGTGGCTCGATGACAGCTGGCACGCCGACCAGGCTGAGGCTGAAGCAAACCGATAAAGCCTTTTTGGAAAGCGCAGTCGACGCCCAACTGGCACCACATTGATTCTTTTTCTGGCAACCGTCCGATTCCTATAgggccg                                                                                                                                 >  2:1158829/1‑137 (MQ=255)

     gCTCGATGACAGCTGGCACGCTGACCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGcc                                                                                                                           >  1:1237674/1‑140 (MQ=255)

      cTCGATGACAGCTGGCACGCTGACCAGCCGGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCt                                                                                                                          <  1:532547/140‑1 (MQ=255)

      cTCGATGACAGCTGGCACGCTGACCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCt                                                                                                                          <  2:946719/140‑1 (MQ=255)

                     cACGCTGACCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGtt                                                                                                           >  1:307157/1‑140 (MQ=255)

                         cTGACCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCAt                                                                                                       <  1:1352610/140‑1 (MQ=255)

                            aCCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATcgc                                                                                                    >  1:1125900/1‑140 (MQ=255)

                             ccagccagTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATcgcg                                                                                                   <  1:1682285/140‑1 (MQ=255)

                                   agTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATg                                                                                             <  1:842346/140‑1 (MQ=255)

                                      ggCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCgcggc                                                                                                 >  2:1626613/1‑133 (MQ=255)

                                      ggCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCgcggc                                                                                                 <  1:1626613/133‑1 (MQ=255)

                                       gCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCgcggc                                                                                                 >  2:627741/1‑132 (MQ=255)

                                       gCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCgcggc                                                                                                 <  1:627741/132‑1 (MQ=255)

                                         tGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACt                                                                                       <  1:154292/140‑1 (MQ=255)

                                             gCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACt                                                                                   <  1:1219117/140‑1 (MQ=255)

                                             gCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACt                                                                                   <  2:906162/140‑1 (MQ=255)

                                               aaaCCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCa                                                                                 >  2:1507783/1‑140 (MQ=255)

                                               aaaCCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCa                                                                                 <  2:857225/140‑1 (MQ=255)

                                                  ccGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCatat                                                                              <  2:307157/140‑1 (MQ=255)

                                                            cATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGAt                                                                    >  1:880426/1‑140 (MQ=255)

                                                                   gATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGc                                                             >  2:1383803/1‑140 (MQ=255)

                                                                        cGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGaaaa                                                        >  2:26694/1‑140 (MQ=255)

                                                                        cGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGaaaa                                                        >  2:1024608/1‑140 (MQ=255)

                                                                        cGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATAGTTAAACAGATCGTCAGCGaaaa                                                        >  1:1199216/1‑140 (MQ=255)

                                                                        cGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTAAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGaaaa                                                        >  1:1050623/1‑140 (MQ=255)

                                                                                 cgCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCa                                               >  2:1370993/1‑140 (MQ=255)

                                                                                  gCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCaa                                              <  1:1507783/140‑1 (MQ=255)

                                                                                  gCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCaa                                              >  1:888045/1‑140 (MQ=255)

                                                                                  gCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCaa                                              <  2:1674024/140‑1 (MQ=255)

                                                                                      aaCTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTa                                          >  1:1639770/1‑140 (MQ=255)

                                                                                       aCTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTAt                                         <  2:888045/140‑1 (MQ=255)

                                                                                            cacaCCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATa                                    <  1:26694/140‑1 (MQ=255)

                                                                                            cacaCCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATa                                    <  2:1639770/140‑1 (MQ=255)

                                                                                                 cATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTc                               <  2:880426/140‑1 (MQ=255)

                                                                                                     aaTTCTTATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTgg                           <  1:1024608/140‑1 (MQ=255)

                                                                                                           tATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATa                                    <  2:62914/125‑1 (MQ=255)

                                                                                                           tATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATa                                    >  1:62914/1‑125 (MQ=255)

                                                                                                           tATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCaat                     >  2:987572/1‑140 (MQ=255)

                                                                                                           tATGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCaat                     >  1:1671240/1‑140 (MQ=255)

                                                                                                             tGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTc                               <  2:1108303/128‑1 (MQ=255)

                                                                                                             tGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTc                               >  1:1108303/1‑128 (MQ=255)

                                                                                                             tGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCaatga                   >  2:185255/1‑140 (MQ=255)

                                                                                                             tGCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCaatga                   >  1:370195/1‑140 (MQ=255)

                                                                                                              gCTGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTAAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCaatgaa                  <  2:1050623/140‑1 (MQ=255)

                                                                                                                tGGCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCaatgaatg                <  1:1002721/140‑1 (MQ=255)

                                                                                                                  gCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCa                       >  2:163651/1‑131 (MQ=255)

                                                                                                                  gCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCa                       <  1:163651/131‑1 (MQ=255)

                                                                                                                  gCAACGGTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCAATGAAtgtg              >  2:796832/1‑140 (MQ=255)

                                                                                                                        gTCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCAATGAATGTGCCTGTa        <  2:132729/140‑1 (MQ=255)

                                                                                                                         tCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCaatgaa                  <  1:701054/129‑1 (MQ=255)

                                                                                                                         tCCGTTTTGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCaatgaa                  >  2:701054/1‑129 (MQ=255)

                                                                                                                              tttGTATA‑GGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCAATGAATGTGCCTGTAGCgaga  <  1:796832/140‑1 (MQ=255)

TAGTGGCTCGATGACAGCTGGCACGCTGACCAGCCAGTGGCTGAAGCAAACCGATAAAGCCATTCTGGATAGCGAAGACGACGCCGAACTGGCACACCATTAATTCTTATGCTGGCAACGGTCCGTTTTGTATAGGGGCCGTTGCCTTACTTTTTAAATGTTCCATCGCGGCGATGCATACTGACTCATATTTAAACAGATCGTCAGCGAAAAAAATGTCCAACTTATCAATACATTCCTGGCTCAATGAATGTGCCTGTAGCGAGA  >  NC_000913/1812223‑1812489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A