Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 145 97.8 3401598 99.2% 3374385 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,193,588 A→G V194A (GTG→GCG)  mrp ← P‑loop NTPase family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,193,5880AG98.8% 296.2 / ‑6.0 82V194A (GTG→GCG) mrpP‑loop NTPase family protein
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (37/44);  total (37/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGGAATGTTTTGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACACCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGCCCAACATTGTTGGGATTGATG  >  NC_000913/2193452‑2193723
                                                                                                                                        |                                                                                                                                         
tGGAATGTTTTGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCAcgccacgcca                                                                                                                                        <  2:1586458/140‑1 (MQ=255)
tGGAATGTTTTGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCAcgccacgcca                                                                                                                                        <  1:212397/140‑1 (MQ=255)
     tGTTTTGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCCCCAGACAGTCAAGATCCGGCCACAAGGTTTCCTGCAACACGGGCATTAACGCGTTGCTCGCCACCGGTCCACGCCACGTCATCGCa                                                                                                                                   <  2:874808/140‑1 (MQ=255)
     tGTTTTGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCa                                                                                                                                   >  1:733910/1‑140 (MQ=255)
     tGTTTTGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCa                                                                                                                                   <  2:929758/140‑1 (MQ=255)
     tGTTTTGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCa                                                                                                                                   <  1:278378/140‑1 (MQ=255)
       ttttGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCAtt                                                                                                                                 >  2:867661/1‑140 (MQ=255)
        tttGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTg                                                                                                                                <  2:222695/140‑1 (MQ=255)
            cgcCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTgtcgt                                                                                                                            <  2:524306/140‑1 (MQ=255)
                aGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGt                                                                                                                       <  2:660912/140‑1 (MQ=255)
                 gCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTg                                                                                                                      <  1:18527/140‑1 (MQ=255)
                    tCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGAcc                                                                                                                   <  2:1093021/140‑1 (MQ=255)
                         tGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATa                                                                                                              <  2:1204347/140‑1 (MQ=255)
                           aaTGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAAc                                                                                                            <  1:867661/140‑1 (MQ=255)
                           aaTGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAAc                                                                                                            <  2:1652221/140‑1 (MQ=255)
                            aTGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAAcc                                                                                                           >  1:659164/1‑140 (MQ=255)
                            aTGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAAcc                                                                                                           >  2:628976/1‑140 (MQ=255)
                             tGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCa                                                                                                          >  1:732278/1‑140 (MQ=255)
                             tGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCa                                                                                                          >  1:384547/1‑140 (MQ=255)
                                 aCCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATa                                                                                                              <  2:578600/132‑1 (MQ=255)
                                 aCCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATa                                                                                                              >  1:578600/1‑132 (MQ=255)
                                     gTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATa                                                                                                              >  2:1266552/1‑128 (MQ=255)
                                     gTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATa                                                                                                              <  1:1266552/128‑1 (MQ=255)
                                     gTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCaattgaatt                                                                                                  >  2:1470947/1‑140 (MQ=255)
                                         cTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGtt                                                                                              >  1:1371703/1‑140 (MQ=255)
                                           ggcggcATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGc                                                                                            <  2:659164/140‑1 (MQ=255)
                                                cATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGc                                                                                      >  1:1675704/1‑140 (MQ=255)
                                                  tatCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCa                                                                                    <  2:803853/140‑1 (MQ=255)
                                                  tatCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCa                                                                                    >  1:1136478/1‑140 (MQ=255)
                                                   atCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCAt                                                                                   >  1:941692/1‑140 (MQ=255)
                                                    tCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATg                                                                                  >  2:639701/1‑140 (MQ=255)
                                                     cAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATga                                                                                 <  1:628976/140‑1 (MQ=255)
                                                         cACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACa                                                                             <  2:732278/140‑1 (MQ=255)
                                                             aGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAAt                                                                         <  2:1210917/140‑1 (MQ=255)
                                                              gATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCAt                                                                                   <  2:1194640/129‑1 (MQ=255)
                                                              gATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCAt                                                                                   >  1:1194640/1‑129 (MQ=255)
                                                              gATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATc                                                                        >  2:905379/1‑140 (MQ=255)
                                                              gATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATc                                                                        >  2:343303/1‑140 (MQ=255)
                                                              gATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGCCCACGCCAGGCCATCGCATGGT‑GTCAAGGGCCCAGAT‑ACCAATTTGATTTGGTGCCAGGGCCATGAGActaaacc                                                                        >  2:133946/1‑134 (MQ=255)
                                                                 aGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGt                                                                     <  2:354546/140‑1 (MQ=255)
                                                                 aGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGt                                                                     <  2:1371703/140‑1 (MQ=255)
                                                                   tCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAAt                                                                         >  2:539055/1‑134 (MQ=255)
                                                                   tCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAAt                                                                         <  1:539055/134‑1 (MQ=255)
                                                                   tCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGc                                                                   <  1:343303/140‑1 (MQ=255)
                                                                   tCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGc                                                                   >  2:698788/1‑140 (MQ=255)
                                                                   tCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGc                                                                   <  2:384547/140‑1 (MQ=255)
                                                                   tCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGc                                                                   <  2:733910/140‑1 (MQ=255)
                                                                   tCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGc                                                                   <  1:1114731/140‑1 (MQ=255)
                                                                   tCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGc                                                                   <  2:1136478/140‑1 (MQ=255)
                                                                      agaTCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCat                                                                >  2:818684/1‑140 (MQ=255)
                                                                       gaTCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCata                                                               <  2:748613/140‑1 (MQ=255)
                                                                        aTCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCatat                                                              >  1:1682230/1‑140 (MQ=255)
                                                                           cGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGcc                                                                  <  2:430108/133‑1 (MQ=255)
                                                                           cGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGcc                                                                  <  2:509110/133‑1 (MQ=255)
                                                                           cGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGcc                                                                  <  2:577499/133‑1 (MQ=255)
                                                                           cGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGcc                                                                  >  1:577499/1‑133 (MQ=255)
                                                                           cGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGcc                                                                  >  1:430108/1‑133 (MQ=255)
                                                                           cGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGcc                                                                  >  1:509110/1‑133 (MQ=255)
                                                                           cGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATggg                                                           <  1:1470947/140‑1 (MQ=255)
                                                                            ggCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGt                                                          >  2:1675143/1‑140 (MQ=255)
                                                                             gCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTa                                                         >  1:53010/1‑140 (MQ=255)
                                                                                acaAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCg                                                      <  1:371971/140‑1 (MQ=255)
                                                                                     gTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCgg                                                 <  1:639701/140‑1 (MQ=255)
                                                                                        tCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGa                                              >  1:1410121/1‑140 (MQ=255)
                                                                                             cAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTg                                         <  1:1675143/140‑1 (MQ=255)
                                                                                             cAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTg                                         <  2:480846/140‑1 (MQ=255)
                                                                                              aaCATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTgg                                        >  1:1405438/1‑140 (MQ=255)
                                                                                              aaCATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTgg                                        >  2:400869/1‑140 (MQ=255)
                                                                                               aCATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGa                                       <  2:941692/140‑1 (MQ=255)
                                                                                               aCATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGa                                       <  2:1405438/140‑1 (MQ=255)
                                                                                                  tCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGc                                    >  1:1190889/1‑140 (MQ=255)
                                                                                                    tGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGa                                       <  1:743854/135‑1 (MQ=255)
                                                                                                    tGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTg                                  >  1:440496/1‑140 (MQ=255)
                                                                                                    tGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTg                                  >  1:393896/1‑140 (MQ=255)
                                                                                                    tGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAAACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGa                                       >  2:743854/1‑135 (MQ=255)
                                                                                                           aCGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGa                                       <  2:243742/128‑1 (MQ=255)
                                                                                                           aCGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGa                                       >  1:243742/1‑128 (MQ=255)
                                                                                                           aCGCCTTGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCt                           <  1:400869/140‑1 (MQ=255)
                                                                                                                ttGCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGcc                      >  1:136356/1‑140 (MQ=255)
                                                                                                                  gCTCGCCATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGCCCa                    >  2:527797/1‑140 (MQ=255)
                                                                                                                        cATCGGTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGCCCAACAttg              <  1:905379/140‑1 (MQ=255)
                                                                                                                             gTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTgcg                        <  1:369050/125‑1 (MQ=255)
                                                                                                                             gTCCACGCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTgcg                        >  2:369050/1‑125 (MQ=255)
                                                                                                                                  cgccacgccaTCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGCCCAACATTGTTGGGATTGa    <  2:1675704/140‑1 (MQ=255)
                                                                                                                                   gCCACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGCCCAACATTGTTGGGATTGAt   <  1:133946/140‑1 (MQ=255)
                                                                                                                                    ccACGCCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGCCCAACATTGTTGGGATTGATg  <  2:393896/140‑1 (MQ=255)
                                                                                                                                    ccACACCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGCCCAACATTGTTGGGATTGATg  <  1:260850/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                         
TGGAATGTTTTGCGCCAGCGTCAATTGAATGTCACCGGTGCCTGGCGGCATATCAAGCACCAGATAGTCGAGATCCGGCCACAAGGTTTCCTGCAACATCTGCATTAACGCCTTGCTCGCCATCGGTCCACGCCACACCATCGCATTGTCGTC‑AGTGACCAGATAACCAATTGAATTGGTTGCCA‑GGCCATGAGACATAATCGGTGCCATATGGGTACCGTCCGGCGAAGTTGGACGCTGATTTTCTGCGCCCAACATTGTTGGGATTGATG  >  NC_000913/2193452‑2193723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A