Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 145 97.8 3401598 99.2% 3374385 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,200,888 A→T I204F (ATC→TTC)  yehI → DUF4132 domain‑containing protein YehI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,200,8880AT97.5% 266.0 / ‑2.1 79I204F (ATC→TTC) yehIDUF4132 domain‑containing protein YehI
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (34/43);  minor base C (1/1);  total (35/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.52e-01

AAACCTATAACGAATTCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGATCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGAACACTACTGGAG  >  NC_000913/2200751‑2201024
                                                                                                                                         |                                                                                                                                        
aaaCCTATAACGAATTCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTtc                                                                                                                                        >  1:527774/1‑140 (MQ=255)
     tataACGAATTCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTccc                                                                                                                                   <  2:66005/140‑1 (MQ=255)
      ataACGAATTCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCg                                                                                                                                  >  1:1222087/1‑140 (MQ=255)
        aaCGAATTCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGa                                                                                                                                <  1:529360/140‑1 (MQ=255)
             aTTCGATCTCCGACCGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAAc                                                                                                                           >  1:1141886/1‑140 (MQ=255)
              ttCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGaaaaa                                                                                                                            >  2:1347261/1‑138 (MQ=255)
              ttCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGaaaaa                                                                                                                            <  1:1347261/138‑1 (MQ=255)
              ttCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAAcc                                                                                                                          >  2:1327327/1‑140 (MQ=255)
                   tctcCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGaaa                                                                                                                     <  1:295671/140‑1 (MQ=255)
                   tctcCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGaaa                                                                                                                     <  1:541419/140‑1 (MQ=255)
                    ctcCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAAt                                                                                                                    <  2:1222087/140‑1 (MQ=255)
                         aCTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCa                                                                                                               <  2:281240/140‑1 (MQ=255)
                          cTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCaa                                                                                                              <  2:1332564/140‑1 (MQ=255)
                          cTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCaa                                                                                                              <  1:1585901/140‑1 (MQ=255)
                           tGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAAt                                                                                                             <  2:527774/140‑1 (MQ=255)
                             cGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGa                                                                                                           >  2:594095/1‑140 (MQ=255)
                               tAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGt                                                                                                         >  2:1495788/1‑140 (MQ=255)
                                 aGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTg                                                                                                       >  1:738899/1‑140 (MQ=255)
                                  gCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTgg                                                                                                      <  2:1141886/140‑1 (MQ=255)
                                  gCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTgg                                                                                                      <  2:738899/140‑1 (MQ=255)
                                   cATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGt                                                                                                     >  1:495707/1‑140 (MQ=255)
                                   cATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGt                                                                                                     <  1:331298/140‑1 (MQ=255)
                                   cATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGt                                                                                                     <  1:1091705/140‑1 (MQ=255)
                                                cAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAGCTCATTGCCGCACTACCAGGAATAAACAAAGTTCCCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCATAAATAGCCAATGAGTTGGTAGGCCTTGAATGc                                                                                        >  2:1688354/1‑140 (MQ=255)
                                                   agGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATg                                                                                         >  2:129365/1‑136 (MQ=255)
                                                   agGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATg                                                                                         <  1:129365/136‑1 (MQ=255)
                                                   agGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCcg                                                                                     >  1:1667357/1‑140 (MQ=255)
                                                   agGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCcg                                                                                     >  2:1603435/1‑140 (MQ=255)
                                                   agGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCcg                                                                                     >  1:882488/1‑140 (MQ=255)
                                                   agGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTAGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATg                                                                                         >  2:1654401/1‑136 (MQ=255)
                                                   agGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTAGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATg                                                                                         <  1:1654401/136‑1 (MQ=255)
                                                     gAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCcgcg                                                                                   <  2:1117992/140‑1 (MQ=255)
                                                     gAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCcgcg                                                                                   <  2:1379398/140‑1 (MQ=255)
                                                     gAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCcgcg                                                                                   >  1:1379398/1‑140 (MQ=255)
                                                     gAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCcgcg                                                                                   >  1:1151430/1‑140 (MQ=255)
                                                         gctgctGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACt                                                                               <  2:882488/140‑1 (MQ=255)
                                                             ctgGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCAtt                                                                           >  1:52001/1‑140 (MQ=255)
                                                             ctgGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCAtt                                                                           >  1:1323801/1‑140 (MQ=255)
                                                                   gCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCAtt                                                                     <  1:1303749/140‑1 (MQ=255)
                                                                    cGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTc                                                                    >  2:303871/1‑140 (MQ=255)
                                                                      ttGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTa                                                                  <  1:807150/140‑1 (MQ=255)
                                                                       tGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTaa                                                                 >  1:1171829/1‑140 (MQ=255)
                                                                         cgcCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAgg                                                               >  1:1638160/1‑140 (MQ=255)
                                                                          gcCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGa                                                              <  1:79956/140‑1 (MQ=255)
                                                                          gcCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGa                                                              <  1:501367/140‑1 (MQ=255)
                                                                           ccGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAg                                                             <  1:1035770/140‑1 (MQ=255)
                                                                           ccGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAg                                                             <  2:620392/140‑1 (MQ=255)
                                                                             gACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTg                                                           <  2:1638160/140‑1 (MQ=255)
                                                                              tcAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTc                                                                        <  1:226137/125‑1 (MQ=255)
                                                                              aCAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTc                                                                        >  2:226137/1‑126 (MQ=255)
                                                                              aCAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTa                                                                  >  2:1413588/1‑132 (MQ=255)
                                                                              aCAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTa                                                                  <  1:1413588/132‑1 (MQ=255)
                                                                              aCAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTgg                                                          >  1:950672/1‑140 (MQ=255)
                                                                                    tCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAGAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTaaaa                                                    <  2:1667357/140‑1 (MQ=255)
                                                                                      aTTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAgt                                                  <  2:1151430/140‑1 (MQ=255)
                                                                                              aCTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAg                                                   <  2:1405185/131‑1 (MQ=255)
                                                                                              aCTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAg                                                   >  1:1405185/1‑131 (MQ=255)
                                                                                               cTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTaa                                         <  1:66357/140‑1 (MQ=255)
                                                                                                tACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAAt                                        <  1:141744/140‑1 (MQ=255)
                                                                                                tACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAAt                                        >  2:110506/1‑140 (MQ=255)
                                                                                                  ccAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGa                                      >  1:1500823/1‑140 (MQ=255)
                                                                                                    aGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGAcc                                    >  1:348926/1‑140 (MQ=255)
                                                                                                       aaTAAACAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCca                                 <  2:52001/140‑1 (MQ=255)
                                                                                                          aaaCAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAg                              <  2:249885/140‑1 (MQ=255)
                                                                                                          aaaCAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAg                              >  2:436884/1‑140 (MQ=255)
                                                                                                          aaaCAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGATGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAg                              >  1:29790/1‑140 (MQ=255)
                                                                                                            aCAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCt                                           >  1:345613/1‑125 (MQ=255)
                                                                                                            aCAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCt                                           <  2:345613/125‑1 (MQ=255)
                                                                                                            aCAAAGTTCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCg                            >  1:222882/1‑140 (MQ=255)
                                                                                                            aCAAAGTTCGCCGCCCTTTTATTGCGCTGCTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCg                            >  2:281873/1‑140 (MQ=255)
                                                                                                                   tCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGaa                     <  1:303871/140‑1 (MQ=255)
                                                                                                                   tCGCCGCCCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGaa                     <  2:762297/140‑1 (MQ=255)
                                                                                                                      ccgccCTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAAc                  >  1:1092547/1‑140 (MQ=255)
                                                                                                                           cTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGaa             <  1:528352/140‑1 (MQ=255)
                                                                                                                           cTTTTATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGaa             <  1:759943/140‑1 (MQ=255)
                                                                                                                            ttttATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGAac            <  1:1061147/140‑1 (MQ=255)
                                                                                                                             tttATTGCGCTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTGGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGAaca           <  2:1171829/140‑1 (MQ=255)
                                                                                                                                    cgcTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCCAATGACCCCACAGCGGTGAGAAAACTCGAACACTACTgg    >  2:607421/1‑140 (MQ=255)
                                                                                                                                      cTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGAACACTACTGGAg  <  2:348926/140‑1 (MQ=255)
                                                                                                                                      cTGTTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGAACACTACTGGAg  <  1:1688354/140‑1 (MQ=255)
                                                                                                                                      cTGCTCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGAACACTACTGGAg  <  2:2314/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
AAACCTATAACGAATTCGATCTCCGACTGCGTAAGCATCTCTCTCTGGCAGAGGAAAGCTGCTGGCAGCGTTGCGCCGACAAACTCATTGCCGCACTACCAGGAATAAACAAAGTTCGCCGCCCTTTTATTGCGCTGATCCTCCCGGAAAAACCAGAAATAGCCAATGAGTTGGTAGGCCTTGAATGCCCGCGAACTCATTTTCATTCTAAGGAGTGGTTAAAAGTTGTTGCTAATGACCCCACAGCGGTGAGAAAACTCGAACACTACTGGAG  >  NC_000913/2200751‑2201024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A