Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 145 97.8 3401598 99.2% 3374385 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,610,630 T→C V156A (GTC→GCC)  hyfH → hydrogenase 4 component H

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,610,6300TC100.0% 271.7 / NA 75V156A (GTC→GCC) hyfHhydrogenase 4 component H
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/42);  total (33/42)

AACGTTGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGTCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTCAGCCAGCCCATCACGCTGGACGAGCA  >  NC_000913/2610507‑2610758
                                                                                                                           |                                                                                                                                
aaCGTTGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCaaa                                                                                                                  >  2:1181127/1‑140 (MQ=255)
aaCGTTGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCaaa                                                                                                                  >  2:431711/1‑140 (MQ=255)
aaCGTTGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAACGAGCGCCTGCCCGGAATGCaaa                                                                                                                  >  2:376559/1‑140 (MQ=255)
  cGTTGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAaaca                                                                                                                <  1:431711/140‑1 (MQ=255)
  cGTTGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAaaca                                                                                                                >  2:102136/1‑140 (MQ=255)
     tGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCTTCCCAGGGCCTGCTGAATTTTAAGCACAGCAACAAAATCCGCCACAAAACCGCGAAATGTTGTGGCCGCAAGCGAGCGCCTGCCGGGAATGCAaaaaacc                                                                                                             >  2:264566/1‑139 (MQ=255)
     tGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGccc                                                                                                                            >  2:1671124/1‑125 (MQ=255)
     tGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGccc                                                                                                                            <  1:1671124/125‑1 (MQ=255)
     tGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcg                                                                                                             >  1:1646048/1‑140 (MQ=255)
     tGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcg                                                                                                             >  1:536532/1‑140 (MQ=255)
     tGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcg                                                                                                             >  1:986367/1‑140 (MQ=255)
     tGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcg                                                                                                             >  2:133653/1‑140 (MQ=255)
       cAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCCTCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAaaca                                                                                                                <  2:1567939/135‑1 (MQ=255)
       cAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAaaca                                                                                                                >  1:1567939/1‑135 (MQ=255)
       cAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcgcg                                                                                                           >  2:119538/1‑140 (MQ=255)
       cAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcgcg                                                                                                           >  2:277398/1‑140 (MQ=255)
       cAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcgcg                                                                                                           <  1:245440/140‑1 (MQ=255)
          ccGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGa                                                                                                        <  2:241850/140‑1 (MQ=255)
          ccGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGa                                                                                                        <  1:1181127/140‑1 (MQ=255)
            gTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcgcg                                                                                                           <  1:736485/135‑1 (MQ=255)
            gTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAAcgcg                                                                                                           >  2:736485/1‑135 (MQ=255)
            gTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACg                                                                                                      <  2:600102/140‑1 (MQ=255)
             ttGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGc                                                                                                     <  1:133653/140‑1 (MQ=255)
                  aaCGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATc                                                                                                <  2:1646048/140‑1 (MQ=255)
                     gCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAac                                                                                             <  1:212771/140‑1 (MQ=255)
                     gCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAac                                                                                             <  1:87580/140‑1 (MQ=255)
                       ccGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAacga                                                                                           <  1:294890/140‑1 (MQ=255)
                       ccGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAACGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAacga                                                                                           <  1:376559/140‑1 (MQ=255)
                          tttGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAAcgacga                                                                                        <  1:519405/140‑1 (MQ=255)
                           ttGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGAt                                                                                       <  2:1191408/140‑1 (MQ=255)
                             gCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATAc                                                                                     <  1:219946/140‑1 (MQ=255)
                               cccGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAg                                                                                   <  1:119538/140‑1 (MQ=255)
                                 cGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGAt                                                                                 >  2:1291830/1‑140 (MQ=255)
                                  gCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATg                                                                                <  1:277398/140‑1 (MQ=255)
                                    aaaaaaCCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTa                                                                              <  1:1291830/140‑1 (MQ=255)
                                         aCCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTActgct                                                                         <  1:65985/140‑1 (MQ=255)
                                          ccATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTActgctg                                                                        <  2:595181/140‑1 (MQ=255)
                                           cATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCtgg                                                                       <  1:638310/140‑1 (MQ=255)
                                                 aCTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTa                                                                 <  1:1274789/140‑1 (MQ=255)
                                                  cTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTaa                                                                >  1:1328030/1‑140 (MQ=255)
                                                   tGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAg                                                               <  1:1013511/140‑1 (MQ=255)
                                                   tGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAg                                                               <  2:1029011/140‑1 (MQ=255)
                                                    ggCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGTGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAgg                                                              >  2:1440479/1‑140 (MQ=255)
                                                     gctgctGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGa                                                             <  1:891783/140‑1 (MQ=255)
                                                     gctgctGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGa                                                             >  2:17568/1‑140 (MQ=255)
                                                      ctgctgAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGTGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGag                                                            <  1:1440479/140‑1 (MQ=255)
                                                       tgctgAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGagc                                                           <  1:585689/140‑1 (MQ=255)
                                                            aaTTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTa                                                      <  1:1039509/140‑1 (MQ=255)
                                                             aTTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTAt                                                     <  1:874474/140‑1 (MQ=255)
                                                             aTTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTAt                                                     <  1:17568/140‑1 (MQ=255)
                                                                  tAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTc                                                <  2:63555/140‑1 (MQ=255)
                                                                   aGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTcc                                               <  1:102136/140‑1 (MQ=255)
                                                                   aGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTcc                                               >  1:1281638/1‑140 (MQ=255)
                                                                        aGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTAt                                                     >  2:318611/1‑129 (MQ=255)
                                                                        aGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTAt                                                     <  1:318611/129‑1 (MQ=255)
                                                                        aGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGc                                          >  1:317741/1‑140 (MQ=255)
                                                                         gCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCt                                         >  1:1429360/1‑140 (MQ=255)
                                                                          caacaaAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCtt                                        >  1:1071857/1‑140 (MQ=255)
                                                                          caacaaAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCtt                                        >  1:416420/1‑140 (MQ=255)
                                                                          caacaaAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCtt                                        >  1:287651/1‑140 (MQ=255)
                                                                           aacaaAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTa                                       >  2:925695/1‑140 (MQ=255)
                                                                               aaaTGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTAcaca                                   <  1:286706/140‑1 (MQ=255)
                                                                               aaaTGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTAcaca                                   >  1:205980/1‑140 (MQ=255)
                                                                                  tGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACacaaca                                >  2:21625/1‑140 (MQ=255)
                                                                                  tGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACacaaca                                >  2:1238005/1‑140 (MQ=255)
                                                                                    cgcCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATg                              >  2:431670/1‑140 (MQ=255)
                                                                                    cgcCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATg                              >  1:1376420/1‑140 (MQ=255)
                                                                                    cgcCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATg                              >  2:648604/1‑140 (MQ=255)
                                                                                    cgcCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATg                              >  1:1069353/1‑140 (MQ=255)
                                                                                      ccACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTc                            <  1:648604/140‑1 (MQ=255)
                                                                                            aaCCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTcagccag                      <  2:205980/140‑1 (MQ=255)
                                                                                            aaCCGCGAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTcagccag                      <  1:431670/140‑1 (MQ=255)
                                                                                                 cgAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTCAGCCAGCCCAt                 <  2:416420/140‑1 (MQ=255)
                                                                                                 cgAAATGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTCAGCCAGCCCAt                 <  2:1140950/140‑1 (MQ=255)
                                                                                                     aTGTTGTGGGCGCAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTCAGCCAGCCCATCACg             <  2:1376420/140‑1 (MQ=255)
                                                                                                                gcAAGCGAGCGCCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTCAGCCAGCCCATCACGCTGGACGAGCa  >  2:890845/1‑140 (MQ=255)
                                                                                                                           |                                                                                                                                
AACGTTGCAGCCGTTGCGAACGCCCGTTTGCCCCGCAAAAAACCATCGCACTGGCTGCTGAATTGTTAGCACAGCAACAAAATGCGCCACAAAACCGCGAAATGTTGTGGGCGCAAGCGAGCGTCTGCCCGGAATGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACTGCTGGTGGCTAAGGAGCAGCTATGAGTCCAGTGCTTACACAACATGTCAGCCAGCCCATCACGCTGGACGAGCA  >  NC_000913/2610507‑2610758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A