Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	145	97.8	3401598	99.2%	3374385	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,896,785	Δ1 bp	coding (1086/1338 nt)	ygcS ←	putative transporter YgcS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,896,782	0	A	.	98.8%	338.1 / ‑2.1	82	coding (1089/1338 nt)	ygcS	putative transporter YgcS
Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (41/40); total (42/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

TGTCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCGTTGCCGCCAGCAGC  >  NC_000913/2896647‑2896917

tGTCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGaaact                                                                                                                                     >  2:590835/1‑138 (MQ=255)

tGTCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGaaact                                                                                                                                     >  2:527865/1‑138 (MQ=255)

tGTCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGaaact                                                                                                                                     >  2:1062772/1‑138 (MQ=255)

 gTCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGaaactt                                                                                                                                    >  1:433450/1‑137 (MQ=255)

  tCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGaaacttt                                                                                                                                   >  2:1223342/1‑136 (MQ=255)

    gCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTcc                                                                                                                                >  2:879427/1‑140 (MQ=255)

    gCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTcc                                                                                                                                >  2:81981/1‑140 (MQ=255)

           gCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCa                                                                                                                         <  2:433450/140‑1 (MQ=255)

           gCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCa                                                                                                                         <  1:879427/140‑1 (MQ=255)

              aTAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCaaaa                                                                                                                      >  1:425/1‑140 (MQ=255)

                aaGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATg                                                                                                                    <  1:1496054/140‑1 (MQ=255)

                  ggTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGcc                                                                                                                  <  2:932827/140‑1 (MQ=255)

                    tGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCcca                                                                                                                >  1:1399858/1‑140 (MQ=255)

                     gACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCAAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCccac                                                                                                               >  2:1375489/1‑140 (MQ=255)

                      aCTTGCATTCCCCACTGCGCCAGCACCCATGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGcc                                                                                                                  >  1:625588/1‑136 (MQ=255)

                      aCTTGCATTCCCCACTGCGCCAGCACCCATGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGcc                                                                                                                  <  2:625588/136‑1 (MQ=255)

                      aCTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCccacc                                                                                                              <  2:377822/140‑1 (MQ=255)

                      aCTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCccacc                                                                                                              <  1:495036/140‑1 (MQ=255)

                       cTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCaaaa                                                                                                                      >  2:381924/1‑131 (MQ=255)

                       cTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCaaaa                                                                                                                      <  1:381924/131‑1 (MQ=255)

                       cTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGcc                                                                                                                  >  1:42263/1‑135 (MQ=255)

                       cTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGcc                                                                                                                  <  2:42263/135‑1 (MQ=255)

                       cTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCccacca                                                                                                             <  1:1564780/140‑1 (MQ=255)

                         tGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGa                                                                                                           >  1:255131/1‑140 (MQ=255)

                           cATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGcc                                                                                                                  <  2:1317158/131‑1 (MQ=255)

                           cATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGcc                                                                                                                  >  1:1317158/1‑131 (MQ=255)

                              tCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTact                                                                                                      <  1:590835/140‑1 (MQ=255)

                                cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactga                                                                                                    <  2:255131/140‑1 (MQ=255)

                                cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactga                                                                                                    >  1:989413/1‑140 (MQ=255)

                                cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactga                                                                                                    >  1:1436577/1‑140 (MQ=255)

                                cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactga                                                                                                    >  1:1338631/1‑140 (MQ=255)

                                cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAAG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactga                                                                                                    <  1:1572028/140‑1 (MQ=255)

                                 ccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactgac                                                                                                   <  2:1381925/140‑1 (MQ=255)

                                 ccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactgac                                                                                                   <  1:822736/140‑1 (MQ=255)

                                 ccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactgac                                                                                                   <  1:527865/140‑1 (MQ=255)

                                 ccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTactgac                                                                                                   <  2:1436577/140‑1 (MQ=255)

                                       cgcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGa                                                                                             <  1:565292/140‑1 (MQ=255)

                                       cgcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGa                                                                                             >  2:386563/1‑140 (MQ=255)

                                       cgcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGa                                                                                             >  2:565292/1‑140 (MQ=255)

                                            gCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAtgg                                                                                        <  2:32786/140‑1 (MQ=255)

                                            gCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAtgg                                                                                        <  2:989413/140‑1 (MQ=255)

                                            gCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAtgg                                                                                        <  1:81981/140‑1 (MQ=255)

                                            gCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAtgg                                                                                        <  1:1227426/140‑1 (MQ=255)

                                                   cGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCt                                                                                 <  1:1387417/140‑1 (MQ=255)

                                                   cGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCt                                                                                 >  2:1321758/1‑140 (MQ=255)

                                                      cagcagGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGaa                                                                              >  2:382974/1‑140 (MQ=255)

                                                       agcagGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAtggt                                                                                       <  2:380997/130‑1 (MQ=255)

                                                       agcagGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAtggt                                                                                       >  1:380997/1‑130 (MQ=255)

                                                        gcagGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAaga                                                                            <  1:377824/140‑1 (MQ=255)

                                                          agGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAgaga                                                                          >  2:623733/1‑140 (MQ=255)

                                                               aGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACaaa                                                                     >  1:115882/1‑140 (MQ=255)

                                                                 tACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACaaa                                                                     <  1:61077/138‑1 (MQ=255)

                                                                 tACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACaaa                                                                     >  2:61077/1‑138 (MQ=255)

                                                                  aCTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAag                                                                  >  2:1389682/1‑140 (MQ=255)

                                                                   cTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagc                                                                 >  1:121873/1‑140 (MQ=255)

                                                                     tACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcag                                                               <  2:34020/140‑1 (MQ=255)

                                                                     tACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcag                                                               <  1:1389682/140‑1 (MQ=255)

                                                                     tACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcag                                                               <  1:1062772/140‑1 (MQ=255)

                                                                     aaCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAGACCGACGCCCAGCAAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcag                                                               <  2:1187641/139‑1 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAag                                                                             >  2:1336198/1‑125 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAag                                                                             <  1:1336198/125‑1 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcagc                                                              >  1:1110374/1‑140 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcagc                                                              >  2:880400/1‑140 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcagc                                                              >  1:1087209/1‑140 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcagc                                                              >  2:9485/1‑140 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcagc                                                              >  1:1446269/1‑140 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcagc                                                              >  2:116548/1‑140 (MQ=255)

                                                                      aCCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGGAGG‑AAACTTTCCGCAGGAAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcagc                                                              >  2:1516602/1‑140 (MQ=255)

                                                                        cgccgcGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAagcagcag                                                            <  2:1446269/140‑1 (MQ=255)

                                                                           cgcgCCAAGTCGACTCATGGCAGTGGCGAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGt                                                         >  1:1187641/1‑140 (MQ=255)

                                                                           cgcgCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCg                                                          >  2:1084535/1‑140 (MQ=255)

                                                                             cgcCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTGAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTa                                                       >  1:1174148/1‑140 (MQ=255)

                                                                             cgcCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTa                                                       <  1:824579/140‑1 (MQ=255)

                                                                             cgcCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTa                                                       >  2:180114/1‑140 (MQ=255)

                                                                             cgcCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTa                                                       >  2:256417/1‑140 (MQ=255)

                                                                             cgcCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACGGCCGAAATGGCGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTa                                                       >  2:1629978/1‑140 (MQ=255)

                                                                               ccAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAAt                                                     <  1:623733/140‑1 (MQ=255)

                                                                                           aTGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGaa                                         <  1:256417/140‑1 (MQ=255)

                                                                                           aTGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGaa                                         <  1:880400/140‑1 (MQ=255)

                                                                                                  tGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAAc                                  >  1:166629/1‑140 (MQ=255)

                                                                                                  tGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAAc                                  <  1:1375489/140‑1 (MQ=255)

                                                                                                     cAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAgg                               <  2:1338631/140‑1 (MQ=255)

                                                                                                                    gcgagcgaATGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCg                <  1:386563/140‑1 (MQ=255)

                                                                                                                           aaTGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCGTTgccgc         >  1:372376/1‑140 (MQ=255)

                                                                                                                           aaTGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCGTTgccgc         >  1:1196801/1‑140 (MQ=255)

                                                                                                                           aaTGTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCGTTgccgc         >  1:875647/1‑140 (MQ=255)

                                                                                                                              gTCAGTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCGTTGCCGCcag      <  1:1437777/140‑1 (MQ=255)

                                                                                                                                  gTAGG‑AAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCGTTGCCGCCagcagc  >  2:822954/1‑140 (MQ=255)

TGTCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCGTTGCCGCCAGCAGC  >  NC_000913/2896647‑2896917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A