Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	145	97.8	3401598	99.2%	3374385	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,142,070	G→A	A307V (GCG→GTG)	hybC ←	hydrogenase 2 large subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,142,070	0	G	A	100.0%	454.0 / NA	127	A307V (GCG→GTG)	hybC	hydrogenase 2 large subunit
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (82/45); total (82/45)

Only 100 of 127 total aligned reads displayed.

AGCCGGAATGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCGCATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCGGT  >  NC_000913/3141934‑3142206

aGCCGGAATGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACAt                                                                                                                                       >  2:1693824/1‑140 (MQ=255)

 gCCGGAATGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACAtt                                                                                                                                      >  2:1401337/1‑140 (MQ=255)

 gCCGGAATGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACAtt                                                                                                                                      >  1:1657222/1‑140 (MQ=255)

   cGGAATGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATtct                                                                                                                                    >  1:1390542/1‑140 (MQ=255)

   cGGAATGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATtct                                                                                                                                    >  1:1395987/1‑140 (MQ=255)

    ggAATGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATtctc                                                                                                                                   <  2:654466/140‑1 (MQ=255)

      aaTGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCaa                                                                                                                                 >  2:157684/1‑140 (MQ=255)

       aTGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAAt                                                                                                                                <  1:711042/140‑1 (MQ=255)

             gtgCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAgcc                                                                                                                          >  2:553227/1‑140 (MQ=255)

               gCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCTTCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAgccgc                                                                                                                        <  2:519785/140‑1 (MQ=255)

                ccTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAgccgcc                                                                                                                       >  1:719182/1‑140 (MQ=255)

                ccTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAgccgcc                                                                                                                       <  1:1379635/140‑1 (MQ=255)

                   tCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAgc                                                                                                                           >  1:830172/1‑133 (MQ=255)

                   tCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAgc                                                                                                                           <  2:830172/133‑1 (MQ=255)

                    cccACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAgccgcc                                                                                                                       >  1:954993/1‑136 (MQ=255)

                    cccACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCggg                                                                                                                   <  2:340043/140‑1 (MQ=255)

                             ccTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATACATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAg                                                                                                          >  2:1492914/1‑140 (MQ=255)

                                  ggcgCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGcc                                                                                                     <  2:496906/140‑1 (MQ=255)

                                     gcTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGtt                                                                                                  >  2:400973/1‑140 (MQ=255)

                                       ttCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGtttt                                                                                                >  2:1049720/1‑140 (MQ=255)

                                       ttCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGtttt                                                                                                >  1:1016703/1‑140 (MQ=255)

                                             tttATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTgt                                                                                          <  1:400973/140‑1 (MQ=255)

                                               tataCCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTgtcg                                                                                        >  2:1362803/1‑140 (MQ=255)

                                                      ggAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCggg                                                                                  <  2:1355461/139‑1 (MQ=255)

                                                      ggAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCggg                                                                                  >  1:1355461/1‑139 (MQ=255)

                                                      ggAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGa                                                                                 >  2:1337938/1‑140 (MQ=255)

                                                        aGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAAt                                                                               >  1:798762/1‑140 (MQ=255)

                                                         gTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAAtt                                                                              >  2:1091724/1‑140 (MQ=255)

                                                         gTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAAtt                                                                              <  2:719182/140‑1 (MQ=255)

                                                          tGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTC‑GTCGGGAATTcc                                                                            >  1:894928/1‑140 (MQ=255)

                                                           gCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTcc                                                                            >  2:676413/1‑140 (MQ=255)

                                                            cTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCg                                                                           >  2:1602895/1‑140 (MQ=255)

                                                            cTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCg                                                                           >  1:1366550/1‑140 (MQ=255)

                                                            cTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCg                                                                           >  2:829529/1‑140 (MQ=255)

                                                            cTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCg                                                                           >  2:125149/1‑140 (MQ=255)

                                                            cTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCg                                                                           >  2:841037/1‑140 (MQ=255)

                                                             ttCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAAtt                                                                              <  2:614068/136‑1 (MQ=255)

                                                             ttCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCgg                                                                          <  1:1021923/140‑1 (MQ=255)

                                                               cgcgCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCa                                                                        <  2:1395987/140‑1 (MQ=255)

                                                               cgcgCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCa                                                                        <  1:553227/140‑1 (MQ=255)

                                                                  gcTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGc                                                                     <  1:1362803/140‑1 (MQ=255)

                                                                                cTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCAcc                                                       >  1:1613273/1‑140 (MQ=255)

                                                                                cTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCAcc                                                       >  1:1187994/1‑140 (MQ=255)

                                                                                cTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCAcc                                                       >  1:787107/1‑140 (MQ=255)

                                                                                cTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCAcc                                                       >  2:1189536/1‑140 (MQ=255)

                                                                                cTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCAcc                                                       >  1:589732/1‑140 (MQ=255)

                                                                                cTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCAcc                                                       >  1:373280/1‑140 (MQ=255)

                                                                                cTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCAcc                                                       >  1:255291/1‑140 (MQ=255)

                                                                                 tttGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCg                                                      <  1:102423/140‑1 (MQ=255)

                                                                                 tttGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCg                                                      <  2:373280/140‑1 (MQ=255)

                                                                                  ttGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCg                                                      >  1:1696952/1‑139 (MQ=255)

                                                                                   tGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCa                                                    <  2:1187994/140‑1 (MQ=255)

                                                                                          gTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTAc                                             >  2:784430/1‑140 (MQ=255)

                                                                                          gTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTAc                                             >  2:198666/1‑140 (MQ=255)

                                                                                          gTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTAc                                             >  2:28400/1‑140 (MQ=255)

                                                                                            aTTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACcg                                           >  2:1680379/1‑140 (MQ=255)

                                                                                            aTTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACcg                                           <  1:676413/140‑1 (MQ=255)

                                                                                              tCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACcgcg                                         >  2:879212/1‑140 (MQ=255)

                                                                                               cATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCgt                                        >  2:1067911/1‑140 (MQ=255)

                                                                                               cATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCgt                                        >  1:1534500/1‑140 (MQ=255)

                                                                                                  cGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACAGCACCTTTACCGCGTGTc                                     >  2:15836/1‑140 (MQ=255)

                                                                                                    gAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAg                                   >  1:1019922/1‑140 (MQ=255)

                                                                                                    gAATGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAg                                   >  1:887002/1‑140 (MQ=255)

                                                                                                     aaTGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTAcc                                            >  2:355507/1‑130 (MQ=255)

                                                                                                     aaTGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTAcc                                            >  2:1683806/1‑130 (MQ=255)

                                                                                                       tGAGAAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCa                                >  2:880315/1‑140 (MQ=255)

                                                                                                         agaAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCAtt                              <  1:125149/140‑1 (MQ=255)

                                                                                                         agaAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCAtt                              <  1:989293/140‑1 (MQ=255)

                                                                                                          gaAGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTc                             <  2:646901/140‑1 (MQ=255)

                                                                                                           aaGTGATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTcc                            <  1:1473531/140‑1 (MQ=255)

                                                                                                               gATCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGt                        >  1:1466149/1‑140 (MQ=255)

                                                                                                                aTCGGACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTa                       >  2:966536/1‑140 (MQ=255)

                                                                                                                   ggACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGaa                    >  1:597823/1‑140 (MQ=255)

                                                                                                                   ggACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGaa                    >  2:488161/1‑140 (MQ=255)

                                                                                                                    gACGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAAc                   <  2:1593311/140‑1 (MQ=255)

                                                                                                                     aCGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAAcg                  <  1:1693824/140‑1 (MQ=255)

                                                                                                                     aCGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAAcg                  >  2:858296/1‑140 (MQ=255)

                                                                                                                     aCGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAAcg                  <  2:597823/140‑1 (MQ=255)

                                                                                                                      cGATACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAAcgc                 <  1:745904/140‑1 (MQ=255)

                                                                                                                        aTACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCgg               >  1:412417/1‑140 (MQ=255)

                                                                                                                         tACGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGc              <  2:1366550/140‑1 (MQ=255)

                                                                                                                          aCGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCa             >  2:987344/1‑140 (MQ=255)

                                                                                                                          aCGAGGACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCa             >  2:1006670/1‑140 (MQ=255)

                                                                                                                               gACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAAc        >  2:1239041/1‑140 (MQ=255)

                                                                                                                               gACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAAc        >  1:1307396/1‑140 (MQ=255)

                                                                                                                               gACAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAAc        >  1:39827/1‑140 (MQ=255)

                                                                                                                                 cAGATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTg      >  2:884197/1‑140 (MQ=255)

                                                                                                                                   gATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCg    >  1:603382/1‑140 (MQ=255)

                                                                                                                                   gATCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCg    >  1:1452734/1‑140 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAAc                   <  1:1128671/124‑1 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAAc                   >  2:1128671/1‑124 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTg      <  1:1624680/137‑1 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTg      >  2:1624680/1‑137 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCgg   >  2:45172/1‑140 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCgg   >  1:1390557/1‑140 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCgg   >  1:820933/1‑140 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCgg   >  2:913223/1‑140 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCgg   >  2:1111206/1‑140 (MQ=255)

                                                                                                                                    aTCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCgg   >  2:969992/1‑140 (MQ=255)

                                                                                                                                     tCCACATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCGGt  <  1:1602895/140‑1 (MQ=255)

AGCCGGAATGGTGGTGCCTTCCCACGGTGCCTGCGGCGCTTCGTCTTTATACCAGGAGTGCTTCGCGCTTTCCTGAATGCCTTTGATCAGGTATTCATCGGAATGAGAAGTGATCGGACGATACGAGGACAGATCCGCATTCTCAATGTAGCCGCCCGGGAACAGGAAGCTGCCGTTTTTACTGTCGGTCGGGAATTCCGGCACGCTCAGGTAGTTCACCGCACCTTTACCGCGTGTCAGCCATTCCGGGTAGAACGCGGCAATAACTGCGGT  >  NC_000913/3141934‑3142206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A