Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	145	97.8	3401598	99.2%	3374385	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,281,898	T→C	intergenic (+273/‑78)	agaA → / → agaS	putative truncated N‑acetylgalactosamine‑6‑phosphate deacetylase/putative galactosamine‑6‑phosphate deaminase/isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,281,898	0	T	C	100.0%	287.1 / NA	78	intergenic (+273/‑78)	agaA/agaS	putative truncated N‑acetylgalactosamine‑6‑phosphate deacetylase/putative galactosamine‑6‑phosphate deaminase/isomerase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (34/44); total (34/44)

AAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATGGAC  >  NC_000913/3281762‑3282022

aaGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGAcaccac                                                                                                                           <  2:820991/140‑1 (MQ=255)

   cGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCaa                                                                                                                        >  1:1041871/1‑140 (MQ=255)

      ttGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGtg                                                                                                                     >  2:1094006/1‑140 (MQ=255)

      ttGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGtg                                                                                                                     >  2:1451006/1‑140 (MQ=255)

      ttGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGtg                                                                                                                     >  2:1639523/1‑140 (MQ=255)

       tGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGtga                                                                                                                    >  1:476337/1‑140 (MQ=255)

        gcgcCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGtgaa                                                                                                                   <  1:1005954/140‑1 (MQ=255)

             gcATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGtgaattgaa                                                                                                              >  1:1030421/1‑140 (MQ=255)

              taTCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGtgaaatgaaa                                                                                                             <  1:198540/139‑1 (MQ=255)

              cATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGtgaaatgaaa                                                                                                             <  1:1613018/140‑1 (MQ=255)

                tCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACg                                                                                                           <  1:1257497/140‑1 (MQ=255)

                tCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACg                                                                                                           <  1:909647/140‑1 (MQ=255)

                 ccAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGa                                                                                                          <  2:1638544/140‑1 (MQ=255)

                 ccAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGa                                                                                                          <  2:1559027/140‑1 (MQ=255)

                 ccAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTCAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGa                                                                                                          <  2:1159036/140‑1 (MQ=255)

                     cAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAgg                                                                                                      <  1:1451006/140‑1 (MQ=255)

                        tCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCaa                                                                                                   >  1:977553/1‑140 (MQ=255)

                          ccTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGt                                                                                                 <  2:1229160/140‑1 (MQ=255)

                          ccTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGt                                                                                                 >  2:248630/1‑140 (MQ=255)

                                    ccTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACa                                                                                       >  1:1356929/1‑140 (MQ=255)

                                    ccTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACa                                                                                       >  2:666658/1‑140 (MQ=255)

                                      tttATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAAc                                                                                     >  1:491125/1‑140 (MQ=255)

                                        tATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGc                                                                                   <  2:756847/140‑1 (MQ=255)

                                         aTCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGcc                                                                                  >  2:1520447/1‑140 (MQ=255)

                                         aTCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTCCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGcc                                                                                  <  1:1237750/140‑1 (MQ=255)

                                          tcttttctttCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGccc                                                                                 <  1:6415/140‑1 (MQ=255)

                                          tcttttctttCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGccc                                                                                 <  2:1659857/140‑1 (MQ=255)

                                           cttttctttCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCg                                                                                <  1:806453/140‑1 (MQ=255)

                                              ttctttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACg                                                                             <  1:1069355/140‑1 (MQ=255)

                                              ttctttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACg                                                                             >  1:18875/1‑140 (MQ=255)

                                                ctttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTc                                                                           <  2:1217858/140‑1 (MQ=255)

                                                 tttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCa                                                                          >  2:696493/1‑140 (MQ=255)

                                                  ttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCaa                                                                         <  1:763567/140‑1 (MQ=255)

                                                  ttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCaa                                                                         <  2:127988/140‑1 (MQ=255)

                                                   tcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAg                                                                        <  2:491125/140‑1 (MQ=255)

                                                   tcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAg                                                                        <  1:765563/140‑1 (MQ=255)

                                                        gATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtcat                                                                   <  2:274398/140‑1 (MQ=255)

                                                          tCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtca                                                                    >  1:323532/1‑137 (MQ=255)

                                                          tCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtca                                                                    <  2:323532/137‑1 (MQ=255)

                                                              aaaTTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACt                                                             <  2:1030421/140‑1 (MQ=255)

                                                                   tCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACGAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGa                                                        >  2:1474095/1‑140 (MQ=255)

                                                                   tCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGa                                                        <  1:1639523/140‑1 (MQ=255)

                                                                    cGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGAt                                                       >  1:1245588/1‑140 (MQ=255)

                                                                      ttttATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGAt                                                       >  2:633033/1‑138 (MQ=255)

                                                                      ttttATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGAt                                                       <  1:633033/138‑1 (MQ=255)

                                                                                 ttttCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAg                                          <  2:1245588/140‑1 (MQ=255)

                                                                                  tttCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGa                                         <  2:18875/140‑1 (MQ=255)

                                                                                   ttCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGaa                                        <  1:1474095/140‑1 (MQ=255)

                                                                                      tcCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAAt                                     <  1:248630/140‑1 (MQ=255)

                                                                                                  tCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCctgct                         >  1:1418173/1‑140 (MQ=255)

                                                                                                  tCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCctgct                         >  2:699527/1‑140 (MQ=255)

                                                                                                  tCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCctgct                         >  1:1156638/1‑140 (MQ=255)

                                                                                                     gTTTCTTTTCTATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTgcc                      >  2:102903/1‑140 (MQ=255)

                                                                                                           tttctATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCa                >  2:825681/1‑140 (MQ=255)

                                                                                                            ttctATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCaa               <  1:1520447/140‑1 (MQ=255)

                                                                                                            ttctATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCaa               >  2:397415/1‑140 (MQ=255)

                                                                                                             tctATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAAc              <  2:723671/140‑1 (MQ=255)

                                                                                                              ctATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCGAcc             <  2:1156638/140‑1 (MQ=255)

                                                                                                              ctATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAAcc             <  2:1422222/140‑1 (MQ=255)

                                                                                                              ctATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAAcc             <  1:666658/140‑1 (MQ=255)

                                                                                                              ctATAGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAAcc             <  1:699527/140‑1 (MQ=255)

                                                                                                                ataGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCgg           >  1:991803/1‑140 (MQ=255)

                                                                                                                 taGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGt          >  1:582325/1‑140 (MQ=255)

                                                                                                                 taGATTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGt          <  1:825681/140‑1 (MQ=255)

                                                                                                                    aTTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACa       >  2:73651/1‑140 (MQ=255)

                                                                                                                    aTTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACa       >  2:1145411/1‑140 (MQ=255)

                                                                                                                    aTTTTAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACa       >  2:878144/1‑140 (MQ=255)

                                                                                                                      tttAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATg     <  1:878144/140‑1 (MQ=255)

                                                                                                                      tttAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATg     <  1:397415/140‑1 (MQ=255)

                                                                                                                      tttAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATg     >  1:18825/1‑140 (MQ=255)

                                                                                                                      tttAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATg     <  2:808034/140‑1 (MQ=255)

                                                                                                                        tAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAAcc             <  2:1547517/130‑1 (MQ=255)

                                                                                                                        tAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAAcc             >  1:1547517/1‑130 (MQ=255)

                                                                                                                        tAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATGGa   <  2:189052/140‑1 (MQ=255)

                                                                                                                        tAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATGGa   <  2:18825/140‑1 (MQ=255)

                                                                                                                        tAATCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATGGa   >  2:913278/1‑140 (MQ=255)

                                                                                                                         aaTCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATGGAc  >  1:913988/1‑140 (MQ=255)

                                                                                                                         aaTCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATGGAc  >  2:818900/1‑140 (MQ=255)

                                                                                                                         aaTCAACGAAAGACACCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATGGAc  <  1:1145411/140‑1 (MQ=255)

AAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTGCTGCCGCCGCAACCGGTACATGGAC  >  NC_000913/3281762‑3282022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A