Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 145 97.8 3401598 99.2% 3374385 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,622,662 C→T L1157L (CTC→CTT)  rhsB → rhs element protein RhsB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,622,6620CT98.7% 202.0 / ‑4.3 75L1157L (CTC→CTT) rhsBrhs element protein RhsB
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (39/35);  total (39/36)
Fisher's exact test for biased strand distribution p-value = 4.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.39e-01

CCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCC  >  NC_000913/3622539‑3622795
                                                                                                                           |                                                                                                                                     
ccgcTGGCGGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAgggg                                                                                                                       <  2:329720/140‑1 (MQ=17)
                        gACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATatg                                                                                               <  2:387268/140‑1 (MQ=255)
                        gACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATatg                                                                                               <  1:1512686/140‑1 (MQ=255)
                         aCCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATatga                                                                                              >  2:842801/1‑140 (MQ=12)
                                 gCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATggg                                                                                      <  2:983897/140‑1 (MQ=255)
                                   aGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGc                                                                                    <  1:842801/140‑1 (MQ=12)
                                   aGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGc                                                                                    >  1:465662/1‑140 (MQ=12)
                                    gATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGc                                                                                    >  2:395048/1‑139 (MQ=12)
                                    gATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGc                                                                                    <  1:395048/139‑1 (MQ=12)
                                    gATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCa                                                                                   <  2:1046462/140‑1 (MQ=12)
                                     aTGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCaa                                                                                  <  1:1466178/140‑1 (MQ=12)
                                      tGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAAc                                                                                 <  1:1116877/140‑1 (MQ=12)
                                      tGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAAc                                                                                 <  2:1060188/140‑1 (MQ=12)
                                      tGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAAc                                                                                 <  1:834404/140‑1 (MQ=12)
                                       gCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAAcc                                                                                >  2:420335/1‑140 (MQ=9)
                                        cAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACct                                                                               <  1:1668011/140‑1 (MQ=2)
                                                 aTGGACCCGGTGTACGCGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCtgaatga                                                                      >  2:144347/1‑140 (MQ=255)
                                                      cccGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAgaga                                                                 >  2:225126/1‑140 (MQ=12)
                                                          gtgtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAAccc                                                             >  1:627110/1‑140 (MQ=12)
                                                           tgtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCg                                                            <  1:1545465/140‑1 (MQ=16)
                                                            gtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGc                                                           >  1:162217/1‑140 (MQ=12)
                                                               cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATc                                                        >  1:131344/1‑140 (MQ=12)
                                                               cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATc                                                        >  1:644984/1‑140 (MQ=12)
                                                                  gCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGc                                                     <  2:162217/140‑1 (MQ=16)
                                                                    cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTg                                                   >  2:1184069/1‑140 (MQ=12)
                                                                    cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTg                                                   >  2:261209/1‑140 (MQ=12)
                                                                    cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTg                                                   >  2:410468/1‑140 (MQ=12)
                                                                    cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTg                                                   >  1:903622/1‑140 (MQ=12)
                                                                     ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAaga                                                                   <  2:896653/123‑1 (MQ=255)
                                                                     ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAaga                                                                   >  1:896653/1‑123 (MQ=12)
                                                                     ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                  >  1:28360/1‑140 (MQ=12)
                                                                     ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                  >  1:1224829/1‑140 (MQ=12)
                                                                     ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                  >  2:505876/1‑140 (MQ=12)
                                                                     ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                  >  1:1321296/1‑140 (MQ=12)
                                                                       cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCAt                                                         <  2:1352538/131‑1 (MQ=16)
                                                                       cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCAt                                                         >  1:1352538/1‑131 (MQ=12)
                                                                       cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                >  2:1615659/1‑140 (MQ=12)
                                                                       cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                >  1:65918/1‑140 (MQ=12)
                                                                       cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                >  2:129114/1‑140 (MQ=12)
                                                                       cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                >  1:1497924/1‑140 (MQ=255)
                                                                                        tACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGcc                               >  2:865502/1‑140 (MQ=255)
                                                                                        tACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGcc                               >  2:1439696/1‑140 (MQ=255)
                                                                                          ccACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgg                             <  2:472365/140‑1 (MQ=255)
                                                                                           cACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCggg                            >  1:1227827/1‑140 (MQ=255)
                                                                                            aCTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                           <  2:627110/140‑1 (MQ=255)
                                                                                            aCTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                           <  1:1184069/140‑1 (MQ=255)
                                                                                            aCTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                           <  2:131344/140‑1 (MQ=255)
                                                                                            aCTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                           <  1:1593973/140‑1 (MQ=255)
                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                           <  1:1560468/137‑1 (MQ=255)
                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                           >  2:1560468/1‑137 (MQ=255)
                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        <  2:48936/140‑1 (MQ=255)
                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        >  1:1488291/1‑140 (MQ=255)
                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        >  2:1086958/1‑140 (MQ=255)
                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        >  1:1291013/1‑140 (MQ=255)
                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        <  1:1438689/140‑1 (MQ=255)
                                                                                                cGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcagc                       <  2:1435391/140‑1 (MQ=255)
                                                                                                 gACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcagca                      <  1:410468/140‑1 (MQ=255)
                                                                                                 gACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcagca                      <  1:505876/140‑1 (MQ=255)
                                                                                                  aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGcagcag                     >  2:894308/1‑140 (MQ=255)
                                                                                                  aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGcagcag                     >  1:605486/1‑140 (MQ=255)
                                                                                                     aTCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTat                  <  2:1224829/140‑1 (MQ=255)
                                                                                                       cgcgGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcagca                      >  2:457518/1‑134 (MQ=255)
                                                                                                       cgcgGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcagca                      <  1:457518/134‑1 (MQ=255)
                                                                                                       cgcgGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTatga                >  1:1545474/1‑140 (MQ=255)
                                                                                                       cgcgGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGCatga                >  2:603075/1‑140 (MQ=11)
                                                                                                         cgGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTatgatg              <  2:1545474/140‑1 (MQ=255)
                                                                                                          ggCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTAtgatga             <  1:1235638/140‑1 (MQ=255)
                                                                                                          ggCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTAtgatga             <  1:1086958/140‑1 (MQ=255)
                                                                                                             cTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATgagga          >  2:424639/1‑140 (MQ=255)
                                                                                                             cTGCCGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATgagga          <  1:1615659/140‑1 (MQ=255)
                                                                                                                ccGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTc       >  1:178473/1‑140 (MQ=255)
                                                                                                                ccGCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTc       >  2:1284736/1‑140 (MQ=255)
                                                                                                                  gCTGGCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCg     <  2:465137/140‑1 (MQ=255)
                                                                                                                     ggCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGcc  <  2:1031952/140‑1 (MQ=255)
                                                                                                                     ggCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc  <  2:16706/140‑1 (MQ=255)
                                                                                                                     ggCCCTTATCAGCAAGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc  <  1:1439696/140‑1 (MQ=255)
                                                                                                                           |                                                                                                                                     
CCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCC  >  NC_000913/3622539‑3622795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A