Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	145	97.8	3401598	99.2%	3374385	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,639,042	T→C	R467R (CGT→CGC)	pitA →	metal phosphate:H(+) symporter PitA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,639,042	0	T	C	98.5%	463.9 / ‑3.1	130	R467R (CGT→CGC)	pitA	metal phosphate:H(+) symporter PitA
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (68/60); total (69/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.20e-01

Only 100 of 135 total aligned reads displayed.

AGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCT  >  NC_000913/3638906‑3639178

aGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCaaa                                                                                                                                       >  2:1256483/1‑140 (MQ=255)

aGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCaaa                                                                                                                                       >  2:291720/1‑140 (MQ=255)

 ggggATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGGCGATGGTGGTAGATGGTGGCGGCTTACAGCGCaaaa                                                                                                                                      >  2:1076523/1‑140 (MQ=255)

 ggggATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCaaaa                                                                                                                                      >  1:1217628/1‑140 (MQ=255)

       gTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGa                                                                                                                                >  2:1155889/1‑140 (MQ=255)

       gTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGa                                                                                                                                >  2:1563423/1‑140 (MQ=255)

       gTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGa                                                                                                                                >  1:465193/1‑140 (MQ=255)

        tCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGAc                                                                                                                               <  2:910767/140‑1 (MQ=255)

         cTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGAcc                                                                                                                              <  1:1256483/140‑1 (MQ=255)

          tGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCa                                                                                                                             <  2:1217628/140‑1 (MQ=255)

            cccAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGc                                                                                                                           >  1:916647/1‑140 (MQ=255)

            cccAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGc                                                                                                                           >  2:152553/1‑140 (MQ=255)

             ccAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCa                                                                                                                          <  1:1263471/140‑1 (MQ=255)

               aGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCAtt                                                                                                                        <  2:389676/140‑1 (MQ=255)

                 aTGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCt                                                                                                                      <  1:1395299/140‑1 (MQ=255)

                  tGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTg                                                                                                                     >  2:1342820/1‑140 (MQ=255)

                   gACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGa                                                                                                                    <  1:291720/140‑1 (MQ=255)

                   gACGGCGGCAGTGTCTAGCGGCCTGGCGAGTTATACCGGGATGGCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGa                                                                                                                    <  1:1391204/140‑1 (MQ=255)

                    aCGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGAt                                                                                                                   <  2:1504137/140‑1 (MQ=255)

                      ggcggcAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCa                                                                                                                          >  2:1640989/1‑131 (MQ=255)

                        cggcAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGcc                                                                                                               <  1:1155889/140‑1 (MQ=255)

                         ggcAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCt                                                                                                              <  1:80397/140‑1 (MQ=255)

                         ggcAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCt                                                                                                              <  2:410347/140‑1 (MQ=255)

                         ggcAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCt                                                                                                              <  2:480535/140‑1 (MQ=255)

                             gtgtCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGgt                                                                                                          <  1:1129301/140‑1 (MQ=255)

                                tCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGtt                                                                                                       >  2:172594/1‑140 (MQ=255)

                                 cTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCTAAACCGTGACCAGCATTCTGATGGCCTGGGTGttt                                                                                                      <  2:507787/140‑1 (MQ=255)

                                      ggCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCt                                                                                                 >  1:1413551/1‑140 (MQ=255)

                                       gCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCtt                                                                                                <  2:1413551/140‑1 (MQ=255)

                                        ccTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTc                                                                                               >  2:927051/1‑140 (MQ=255)

                                        ccTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTc                                                                                               >  1:438543/1‑140 (MQ=255)

                                         cTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTcc                                                                                              <  1:1358999/140‑1 (MQ=255)

                                         cTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTcc                                                                                              <  1:634540/140‑1 (MQ=255)

                                         cTGGCGAGTTATACCGGGAAGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTcc                                                                                              >  2:656203/1‑140 (MQ=255)

                                            gCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGc                                                                                           >  2:1110380/1‑140 (MQ=255)

                                                         ggATGCCGGTTTCCACTACTCACGTATTCTCCTCTTCTGTCGCGGGGACGAAGGTGGAAGATGGTGGCAGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGCGTTTACCCTTCCGGCTGCGGCACTGcgt                                                                              >  2:1376625/1‑138 (MQ=255)

                                                          gATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCttt                                                                             >  2:323216/1‑140 (MQ=255)

                                                           aTGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTa                                                                                    >  2:164249/1‑132 (MQ=255)

                                                           aTGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTa                                                                                    <  1:164249/132‑1 (MQ=255)

                                                            tGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTcc                                                                           >  1:456472/1‑140 (MQ=255)

                                                              ccGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCcgg                                                                         >  2:1538546/1‑140 (MQ=255)

                                                              ccGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCcgg                                                                         <  1:152553/140‑1 (MQ=255)

                                                                  tttCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCggg                                                                     <  1:1567205/140‑1 (MQ=255)

                                                                  tttCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCggg                                                                     <  1:1563423/140‑1 (MQ=255)

                                                                   ttCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGc                                                                    <  1:1691163/140‑1 (MQ=255)

                                                                   ttCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGc                                                                    <  1:1160445/140‑1 (MQ=255)

                                                                     ccACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTg                                                                  <  1:323216/140‑1 (MQ=255)

                                                                      cACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGt                                                                 <  2:456472/140‑1 (MQ=255)

                                                                       actactCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTa                                                                <  1:135156/140‑1 (MQ=255)

                                                                          actCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTg                                                             <  1:112074/140‑1 (MQ=255)

                                                                              aCGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGctc                                                         >  2:828022/1‑140 (MQ=255)

                                                                              aCGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGctc                                                         >  1:100606/1‑140 (MQ=255)

                                                                              aCGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGctc                                                         >  1:149335/1‑140 (MQ=255)

                                                                                   ctctCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCt                                                     <  2:401506/139‑1 (MQ=255)

                                                                                   ctctCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCt                                                     >  1:401506/1‑139 (MQ=255)

                                                                                    tctcCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTg                                                   <  1:1522401/140‑1 (MQ=255)

                                                                                    tctcCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTg                                                   <  1:484130/140‑1 (MQ=255)

                                                                                     ctcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGc                                                           >  1:1270828/1‑131 (MQ=255)

                                                                                     ctcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGc                                                           <  2:1270828/131‑1 (MQ=255)

                                                                                     ctcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGc                                                  >  2:321587/1‑140 (MQ=255)

                                                                                     ctcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGc                                                  >  2:736934/1‑140 (MQ=255)

                                                                                      tcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCa                                                 >  2:760087/1‑140 (MQ=255)

                                                                                      tcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCa                                                 <  1:927051/140‑1 (MQ=255)

                                                                                      tcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCa                                                 >  1:578716/1‑140 (MQ=255)

                                                                                      tcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCa                                                 >  2:1456729/1‑140 (MQ=255)

                                                                                      tcctcTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCa                                                 <  1:760087/140‑1 (MQ=255)

                                                                                        ctctTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGt                                               <  1:1456729/140‑1 (MQ=255)

                                                                                        ctctTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTCTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGt                                               <  2:533662/140‑1 (MQ=255)

                                                                                             ctGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTg                                          <  2:637924/140‑1 (MQ=255)

                                                                                             ctGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTg                                          >  2:1445161/1‑140 (MQ=255)

                                                                                                tCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTaa                                       >  2:1586495/1‑140 (MQ=255)

                                                                                                tCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTaa                                       >  1:852949/1‑140 (MQ=255)

                                                                                                tCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTaa                                       >  1:1428840/1‑140 (MQ=255)

                                                                                                  gcgGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATc                                     >  1:220850/1‑140 (MQ=255)

                                                                                                     gggACGATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTa                                  >  1:411035/1‑140 (MQ=255)

                                                                                                          gATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCAc                             >  2:891742/1‑140 (MQ=255)

                                                                                                          gATGGTGGTAGATGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCAc                             >  1:1118897/1‑140 (MQ=255)

                                                                                                                     aTGGTGGCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCg                  >  1:308423/1‑140 (MQ=255)

                                                                                                                      tggtggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCgg                 >  2:1204487/1‑140 (MQ=255)

                                                                                                                      tggtggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCgg                 <  1:828022/140‑1 (MQ=255)

                                                                                                                      tggtggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCgg                 <  1:493363/140‑1 (MQ=255)

                                                                                                                      tggtggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCgg                 <  1:321587/140‑1 (MQ=255)

                                                                                                                       ggtggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCggg                >  1:499371/1‑140 (MQ=255)

                                                                                                                        gtggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGt               >  2:1452928/1‑140 (MQ=255)

                                                                                                                        gtggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGt               >  2:325280/1‑140 (MQ=255)

                                                                                                                         tggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTc              >  1:1035321/1‑140 (MQ=255)

                                                                                                                         tggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTc              >  1:246975/1‑140 (MQ=255)

                                                                                                                         tggCGGCTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTc              >  1:784635/1‑140 (MQ=255)

                                                                                                                           gcggcTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAg                    <  1:620452/132‑1 (MQ=255)

                                                                                                                           gcggcTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAg                    >  2:620452/1‑132 (MQ=255)

                                                                                                                           gcggcTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCgg                 <  1:1668379/135‑1 (MQ=255)

                                                                                                                           gcggcTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCgg                 >  2:1668379/1‑135 (MQ=255)

                                                                                                                           gcggcTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAg            >  1:1371335/1‑140 (MQ=255)

                                                                                                                           gcggcTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAg            >  1:1040658/1‑140 (MQ=255)

                                                                                                                            cggcTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGc           >  1:1581116/1‑140 (MQ=255)

                                                                                                                               cTTACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTgg        <  2:852949/140‑1 (MQ=255)

                                                                                                                                ttACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGc       <  2:100606/140‑1 (MQ=255)

                                                                                                                                ttACAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGc       <  2:1371335/140‑1 (MQ=255)

                                                                                                                                  aCAGCGCAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCCCCAAAACGAGCGGGTCAGCTGGccc     <  2:1118897/140‑1 (MQ=255)

                                                                                                                                     gcgcAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACACTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCt  <  2:1571423/140‑1 (MQ=255)

AGGGGATGTCTGCCCAGATGACGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACTACTCACGTACTCTCCTCTTCTGTCGCGGGGACGATGGTGGTAGATGGTGGCGGCTTACAGCGTAAAACCGTGACCAGCATTCTGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCT  >  NC_000913/3638906‑3639178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A