Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 145 97.8 3401598 99.2% 3374385 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,786,481 A→G T408A (ACC→GCC)  gpmM → 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,786,4810AG100.0% 338.2 / NA 94T408A (ACC→GCC) gpmM2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (43/51);  total (43/51)

CACCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACACCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTGAGCAGATGCGC  >  NC_000913/3786344‑3786615
                                                                                                                                          |                                                                                                                                      
cACCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGcc                                                                                                                                      <  1:147763/140‑1 (MQ=255)
 aCCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACATGGGTAGGTCACGcc                                                                                                                                      >  2:907457/1‑140 (MQ=255)
 aCCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCg                                                                                                                                     >  1:339818/1‑140 (MQ=255)
 aCCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCg                                                                                                                                     >  2:1233031/1‑140 (MQ=255)
 aCCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCg                                                                                                                                     <  2:604581/140‑1 (MQ=255)
 aCCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCg                                                                                                                                     >  1:1503818/1‑140 (MQ=255)
 aCCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCg                                                                                                                                     >  1:1589444/1‑140 (MQ=255)
  ccGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCgg                                                                                                                                    <  1:257424/140‑1 (MQ=255)
     aaaGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGt                                                                                                                                 <  1:303676/140‑1 (MQ=255)
           gCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGa                                                                                                                           >  1:1656505/1‑140 (MQ=255)
             tacctacGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAg                                                                                                                         >  2:905953/1‑140 (MQ=255)
               cctacGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAgcg                                                                                                                       <  1:1696056/140‑1 (MQ=255)
                   cGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGcggcgg                                                                                                                   >  2:1011475/1‑140 (MQ=255)
                   cGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGcggcgg                                                                                                                   >  2:321823/1‑140 (MQ=255)
                     aTCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAGGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGtt                                                                                                                 >  2:52482/1‑140 (MQ=255)
                     aTCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGtt                                                                                                                 >  2:181144/1‑140 (MQ=255)
                        tGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTaaa                                                                                                              <  2:378516/140‑1 (MQ=255)
                        tGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTaaa                                                                                                              <  1:166535/140‑1 (MQ=255)
                        tGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTaaa                                                                                                              <  2:991761/140‑1 (MQ=255)
                         gCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTaaaa                                                                                                             >  1:1367443/1‑139 (MQ=255)
                         gCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGATAAAg                                                                                                             >  1:332124/1‑140 (MQ=255)
                          cAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGc                                                                                                            >  2:779428/1‑140 (MQ=255)
                             ccGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGt                                                                                                         >  1:496796/1‑140 (MQ=255)
                               ggAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTaaaaagggtg                                                                                                       >  2:105487/1‑133 (MQ=255)
                               ggAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTg                                                                                                       <  1:905953/140‑1 (MQ=255)
                                gAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGa                                                                                                      >  1:372424/1‑140 (MQ=255)
                                  aaTGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGTAAGCGGCGGTTAAAGTGGTTGAAg                                                                                                    <  2:1155583/140‑1 (MQ=255)
                                  aaTGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAg                                                                                                    <  1:1010798/140‑1 (MQ=255)
                                  aaTGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAg                                                                                                    <  1:1233031/140‑1 (MQ=255)
                                    tGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAgcg                                                                                                  <  2:496796/140‑1 (MQ=255)
                                    tGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAgcg                                                                                                  <  2:339818/140‑1 (MQ=255)
                                    tGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGGTGGAgcg                                                                                                  >  2:182287/1‑140 (MQ=255)
                                      aGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCt                                                                                                <  2:372424/140‑1 (MQ=255)
                                       gCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTg                                                                                               >  1:1080961/1‑140 (MQ=255)
                                            gCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCa                                                                                          <  1:85953/140‑1 (MQ=255)
                                             cAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTg                                                                                               <  1:196265/134‑1 (MQ=255)
                                             cAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTg                                                                                               >  2:196265/1‑134 (MQ=255)
                                               gagCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTg                                                                                       <  1:321823/140‑1 (MQ=255)
                                                agCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGc                                                                                      <  1:182287/140‑1 (MQ=255)
                                                     aCCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAACGGGTGGAGCGGTGGGTTACTGCGTggg                                                                                 >  1:1067066/1‑139 (MQ=255)
                                                     aCCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAACGGGTGAAGCGCTGGGGCACTGCggggg                                                                                 >  2:1178765/1‑139 (MQ=255)
                                                     aCCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGGTGAAGGGCTGGGTTACCGCGTggg                                                                                 >  1:399052/1‑139 (MQ=255)
                                                     aCCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAAAGGTTGAAGGGCCGGGTCACTGCggggg                                                                                 >  2:85953/1‑139 (MQ=255)
                                                         aaaaaCTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGgaagaa                                                                             <  1:1564849/140‑1 (MQ=255)
                                                                  ttGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGGTGGAGCGCTGGATCACTGCGTGGGAGAAGTCGCGaaa                                                                    >  1:602970/1‑140 (MQ=255)
                                                                   tGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAg                                                                   <  2:854638/140‑1 (MQ=255)
                                                                    gCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAGCGGGTGGAGCGCTGGGGCACTGCGGGGGAGAAGGCGCGgaaag                                                                  >  2:208669/1‑138 (MQ=255)
                                                                      ggCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCgg                                                                <  1:1503899/140‑1 (MQ=255)
                                                                        ccATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGtt                                                              <  2:982823/140‑1 (MQ=255)
                                                                        ccATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGtt                                                              <  1:1178765/140‑1 (MQ=255)
                                                                        ccATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGtt                                                              <  1:1146128/140‑1 (MQ=255)
                                                                        ccATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGtt                                                              <  2:866858/140‑1 (MQ=255)
                                                                        ccATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGtt                                                              <  2:1251148/140‑1 (MQ=255)
                                                                        ccATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGtt                                                              <  2:1324414/140‑1 (MQ=255)
                                                                          aTCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGa                                                            <  1:105487/140‑1 (MQ=255)
                                                                                agCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCgt                                                      <  2:683306/140‑1 (MQ=255)
                                                                                  cGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGTTGAAGCGCTGGGTCACTGCGTGGGAGAAGGCGCGAAAACGGGTGAGGCCgggg                                                    >  2:1468722/1‑140 (MQ=255)
                                                                                   ggCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCgtggg                                                   <  2:159855/140‑1 (MQ=255)
                                                                                    gCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAACGGGTTGAGCGCTGGGTCACCGCGGGGGAGAAGTCGCGGAAACGGGTGAGGCCgggggg                                                  >  2:563644/1‑139 (MQ=255)
                                                                                        aTACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGAc                                              <  2:747504/140‑1 (MQ=255)
                                                                                        aTACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGAc                                              <  2:1080961/140‑1 (MQ=255)
                                                                                        aTACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGAc                                              <  2:1654706/140‑1 (MQ=255)
                                                                                        aTACAACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGAc                                              <  1:616798/140‑1 (MQ=255)
                                                                                             acacCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAAGGGGTGAAGAGCTGGGTCACTGCGTGGGAGAAGTCGCGAAAACGGGTGAGTCCGTGGGGGGGGAActg                                         >  2:683798/1‑140 (MQ=255)
                                                                                                  atcatcTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGAt                                    <  1:52482/140‑1 (MQ=255)
                                                                                                  atcatcTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGAt                                    <  1:181144/140‑1 (MQ=255)
                                                                                                    catcTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCa                                  <  1:479293/140‑1 (MQ=255)
                                                                                                    catcTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCa                                  <  1:563644/140‑1 (MQ=255)
                                                                                                        tGTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGTTGAAGCGCTGGAACACTGCGTGGGAGAAGACACGAAAACGGGTGAGTCCCTGGGTGGGCAAATCCTGCTcccccc                              >  2:1239990/1‑138 (MQ=255)
                                                                                                         gTAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCt                             <  1:683798/140‑1 (MQ=255)
                                                                                                          tAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGGTGAAGGGCTGGGTCACTGCGGGGGAGAAAACGCGAAAACGGGTGAGTCCGTGGGGGGGCAACTGCTGGTCAcccccg                            >  2:739410/1‑136 (MQ=255)
                                                                                                          tAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGGTGAAGCGCTGGGTCACTGCGTGGGAGAAATCGCGAAAGCGGGTGAGTCCGTGGGGGGGCAACTGCTGATCACCGccg                            >  2:1294717/1‑138 (MQ=255)
                                                                                                          tAACTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGGTAAAAGGGGTGAAGGGGTGGGGCACTGCGGGGGAGGAGTCGCGGAAGAGGTTGAGTTCGTGGGGGGAGAAATGCTGATCACCGCTg                            >  2:452780/1‑140 (MQ=255)
                                                                                                           aaCTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAAAGGGTGAAGCGCCGGGTCACTGCGGGGGAGAAAACGCGGAAAAGGGTGAGTGCGTGGGGGGGGAACTGCTGATCAcccccga                           >  2:1282407/1‑135 (MQ=255)
                                                                                                            aCTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGAc                          <  1:80464/140‑1 (MQ=255)
                                                                                                             cTATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAGCGGGTGAAGCGCTGGGTCACTGCGTGGGAGAAGTCGCGAAAGCGGGTGAGTCCGTGGGGGGGCAACTGCTGATCACCGCTGAcc                         >  2:1303421/1‑140 (MQ=255)
                                                                                                              tATCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCa                        <  1:1282407/140‑1 (MQ=255)
                                                                                                               aTCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTTAGGGGGTGAAGCGCTGGGTGACTGCGGGGGAGCAGACGCGCAACCGGCTCAGCCCGCGGGGGGGCAACTGCTGATCACCGCTGAcccc                       >  2:80464/1‑138 (MQ=255)
                                                                                                                tCCGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGGTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACg                      >  2:981763/1‑140 (MQ=255)
                                                                                                                 ccGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACgg                     <  2:778385/140‑1 (MQ=255)
                                                                                                                 ccGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACgg                     <  1:208669/140‑1 (MQ=255)
                                                                                                                 ccGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGGTGAAGCGCTGGGTCACTGCGTGGAAGAAGTCGCGAAAGCGGGTGAGTCCGTGGGGGGGCAAATGCTGATCACCGCTGGCCACgg                     >  2:1328861/1‑140 (MQ=255)
                                                                                                                  cGAACGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAACGGTTGGAGCGCTGGATCACTGCGTGGGAGAAGTCGCGAAAACGGGTGGGGCCGGGGGGGGGCAAATCCTGATCACCGCCGCCCAccgg                    >  2:1638837/1‑137 (MQ=255)
                                                                                                                    aaCGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAACGGGTGAAGCGCTGGATCACTGCGTGGGAGAAGGCGCGAAAACGGTTGAGTCCGGGGGGGGGCAACTGCTGATCACCGCCGACCACGGTaa                  >  2:636345/1‑140 (MQ=255)
                                                                                                                    aaCGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGGTGAAGCGCTGGGTCACTGCGTGGGAGAAGTCGCGAAAGCGGTTGAGGCCGTGGGGGGGCAACTGCTGATCACCCCCGACCACGGGaa                  >  2:140051/1‑140 (MQ=255)
                                                                                                                      cGGCGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGTGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGAACAACTGCTGATCACCGCTGACCACGGTAACg                <  1:452780/140‑1 (MQ=255)
                                                                                                                         cGACAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTg             <  1:1328861/140‑1 (MQ=255)
                                                                                                                           aCAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTGAg           <  2:1067066/140‑1 (MQ=255)
                                                                                                                           aCAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTGAg           <  1:739410/140‑1 (MQ=255)
                                                                                                                           aCAT‑GGTAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTGAg           <  1:1294717/140‑1 (MQ=255)
                                                                                                                                  tAGGTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTGAGCAGATg     <  1:907457/140‑1 (MQ=255)
                                                                                                                                   aGGTCACGCCGGGGTGATGGAAGCGGCGGTTTAAACGGGTGGAGGGCCGGGTCACTGCGTGGAAGAAATCGCGAAAGCGGGTGAGTCCGTGGGGGGGCAAATGCTGATCACCGCCGACCACGGGAACGCCGAGCAGATgc    >  2:1141755/1‑140 (MQ=255)
                                                                                                                                    ggTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTGAGCAGATgcg   <  1:779428/140‑1 (MQ=255)
                                                                                                                                     gTCACGCCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGGAGAAGTCGCGAAAGCGGGTGAGTCCGTGGGGGGGCAACTGCTGGTCACCCCCGACCACGGTAACGCTGAGCAGATgcgc  >  2:721773/1‑140 (MQ=255)
                                                                                                                                          |                                                                                                                                      
CACCGAAAGTGGCTACCTACGATCTGCAACCGGAAATGAGCTCCGCAGAGCTGACCGAAAAACTGGTTGCGGCCATCAAGAGCGGCAAATACGACACCATCATCTGTAACTATCCGAACGGCGACAT‑GGTAGGTCACACCGGGGTGATGGAAGCGGCGGTTAAAGCGGTTGAAGCGCTGGATCACTGCGTGGAAGAAGTCGCGAAAGCGGTTGAGTCCGTGGGTGGACAACTGCTGATCACCGCTGACCACGGTAACGCTGAGCAGATGCGC  >  NC_000913/3786344‑3786615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A