Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	164	66.7	2276140	99.1%	2255654	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,883,098	(C)_6→7	coding (1041/1509 nt)	casA ←	type I‑E CRISPR system Cascade subunit CasA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,883,092	1	.	C	100.0%	210.2 / NA	56	G349G (GGA→GGG)	casA	type I‑E CRISPR system Cascade subunit CasA
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (27/29); total (27/29)

GCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑CCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGA  >  NC_000913/2882955‑2883223

gCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑cc                                                                                                                                   <  2:657472/140‑1 (MQ=255)

 ccTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑ccc                                                                                                                                  >  1:1020967/1‑140 (MQ=255)

 ccTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑ccc                                                                                                                                  >  1:814868/1‑140 (MQ=255)

 ccTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑ccc                                                                                                                                  >  2:316033/1‑140 (MQ=255)

 ccTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑ccc                                                                                                                                  >  2:845966/1‑140 (MQ=255)

 ccTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑ccc                                                                                                                                  >  1:618491/1‑140 (MQ=255)

  cTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑ccc                                                                                                                                  <  2:329041/139‑1 (MQ=255)

  cTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑ccc                                                                                                                                  >  1:329041/1‑139 (MQ=255)

    tGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑cccccc                                                                                                                               >  2:1126949/1‑140 (MQ=255)

     gCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑ccccccc                                                                                                                              <  2:486368/140‑2 (MQ=255)

          aGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAAt                                                                                                                          <  2:618491/140‑1 (MQ=255)

          aGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAAt                                                                                                                          <  1:915540/140‑1 (MQ=255)

          aGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAAt                                                                                                                          <  1:662089/140‑1 (MQ=255)

                ttttATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAAt                                                                                                                          >  1:24829/1‑134 (MQ=255)

                ttttATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAAt                                                                                                                          <  2:24829/134‑1 (MQ=255)

                ttttATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTc                                                                                                                    >  2:430156/1‑140 (MQ=255)

                     tatCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAagag                                                                                                               >  2:274685/1‑140 (MQ=255)

                       tCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGa                                                                                                             >  2:572305/1‑140 (MQ=255)

                            aaCCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTg                                                                                                        >  1:934056/1‑140 (MQ=255)

                             aCCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTgc                                                                                                       >  1:590113/1‑140 (MQ=255)

                               cAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTgcgg                                                                                                     <  2:839119/140‑1 (MQ=255)

                                 aCAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTgcggcg                                                                                                   <  2:590113/140‑1 (MQ=255)

                                 aCAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTgcggcg                                                                                                   <  1:375592/140‑1 (MQ=255)

                                  cAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGgcgc                                                                                                  >  2:126848/1‑140 (MQ=255)

                                  cAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGgcgc                                                                                                  >  2:85502/1‑140 (MQ=255)

                                              cGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGaa                                                                                      <  1:2982/140‑1 (MQ=255)

                                               gTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAAt                                                                                     <  2:932081/140‑1 (MQ=255)

                                                tttATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAAtt                                                                                    >  2:399422/1‑140 (MQ=255)

                                                     cacaTTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTc                                                                               <  1:1126949/140‑1 (MQ=255)

                                                               tATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAAccgccg                                                                     >  2:20185/1‑140 (MQ=255)

                                                                      gCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCAcgcg                                                              >  2:644637/1‑140 (MQ=255)

                                                                              tGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAGCCGCCGCCACGCGATTTCcat                                                      >  2:829714/1‑140 (MQ=255)

                                                                              tGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcat                                                      >  2:704966/1‑140 (MQ=255)

                                                                                aTTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcattt                                                    <  2:1020967/140‑1 (MQ=255)

                                                                                aTTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcatt                                                     <  1:838554/139‑1 (MQ=255)

                                                                                aTTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcatt                                                     >  2:838554/1‑139 (MQ=255)

                                                                                     acaacaACCCATCAAGACCCCGTTTAAAAATAAAAGCTTGATTTTTACGAAAAC‑CCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTAAATTGATTCACAACCGCCGCCACGCGATTTCcattttcatt                                               <  2:539849/140‑1 (MQ=255)

                                                                                     aCATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcattttcatt                                               <  1:910924/140‑1 (MQ=255)

                                                                                     aCATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcattttcatt                                               >  1:997499/1‑140 (MQ=255)

                                                                                          aaCACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAGGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa                                          <  1:20185/140‑1 (MQ=255)

                                                                                          aaCACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCGCAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa                                          <  1:534093/140‑1 (MQ=255)

                                                                                          aaCACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa                                          <  1:450938/140‑1 (MQ=255)

                                                                                          aaCACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa                                          <  1:572305/140‑1 (MQ=255)

                                                                                           acacATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaat                                         >  1:61888/1‑140 (MQ=255)

                                                                                            cacaTCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaata                                        <  1:644637/140‑1 (MQ=255)

                                                                                            cacaTCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaata                                        <  1:430156/140‑1 (MQ=255)

                                                                                               atcatGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATc                                     >  2:252647/1‑140 (MQ=255)

                                                                                                 catGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCtt                                   >  2:743519/1‑140 (MQ=255)

                                                                                                 catGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCtt                                   <  1:897777/140‑1 (MQ=255)

                                                                                                  atGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTa                                  <  2:997499/140‑1 (MQ=255)

                                                                                                       gCCGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTAc                             <  1:274685/140‑1 (MQ=255)

                                                                                                         cGTTCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACca                           >  2:77098/1‑140 (MQ=255)

                                                                                                           ttCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACcaca                         >  1:900863/1‑140 (MQ=255)

                                                                                                           ttCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACcaca                         >  1:583301/1‑140 (MQ=255)

                                                                                                           ttCAAGAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACcaca                         >  1:704627/1‑140 (MQ=255)

                                                                                                                gAATAGATGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCg                    <  2:900863/140‑1 (MQ=255)

                                                                                                                      aTGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAt              >  1:503212/1‑140 (MQ=255)

                                                                                                                      aTGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAt              >  1:698835/1‑140 (MQ=255)

                                                                                                                      aTGCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAt              <  1:226896/140‑1 (MQ=255)

                                                                                                                        gCTTGATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAttt            <  1:531041/140‑1 (MQ=255)

                                                                                                                            gATTATTACG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTgtgt        <  1:316033/140‑1 (MQ=255)

                                                                                                                                 ttaCG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatg   >  1:567703/1‑140 (MQ=255)

                                                                                                                                 ttaCG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatg   >  2:950867/1‑140 (MQ=255)

                                                                                                                                  taCG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatga  <  2:820659/140‑1 (MQ=255)

                                                                                                                                  taCG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatga  >  1:820659/1‑140 (MQ=255)

                                                                                                                                  taCG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatga  <  2:934056/140‑1 (MQ=255)

                                                                                                                                  taCG‑ATATCCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatga  <  1:85502/140‑1 (MQ=255)

GCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACG‑ATAT‑CCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGA  >  NC_000913/2882955‑2883223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A