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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	126	51.4	1736588	99.0%	1719222	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC	NC_000913	2,067,354	Δ35,590 bp	between IS5	yoeA–insH‑7	41 genes yoeA, insD‑3, insC‑3, yoeA, yeeP, isrC, flu, yeeR, yeeS, yeeT, cbeA, cbtA, yeeW, yoeF, yeeX, yeeA, sbmC, dacD, sbcB, yeeD, yeeE, plaP, yoeI, yeeY, yeeZ, yoeB, yefM, hisL, hisG, hisD, hisC, hisB, hisH, hisA, hisF, hisI, wzzB, ugd, gnd, wbbL, insH‑7

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2066553–2066706	2102863–2101748	35043–36311	12 [11]	[11] 12	[insH‑6]–[insH‑7]	[insH‑6],yoeA,insD‑3,insC‑3,yoeA,yeeP,isrC,flu,yeeR,yeeS,yeeT,cbeA,cbtA,yeeW,yoeF,yeeX,yeeA,sbmC,dacD,sbcB,yeeD,yeeE,plaP,yoeI,yeeY,yeeZ,yoeB,yefM,hisL,hisG,hisD,hisC,hisB,hisH,hisA,hisF,hisI,wzzB,ugd,gnd,wbbL,[insH‑7]

GATK/CNVnator alignment

N/A