Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	139	58.0	1973578	98.9%	1951868	138.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,288,561	(C)_7→8	pseudogene (354/2525 nt)	yejO ←	adhesin‑like autotransporter YejO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,288,554	1	.	C	98.7%	261.0 / ‑3.4	75	pseudogene (361/2525 nt)	yejO	adhesin‑like autotransporter YejO
Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (38/36); total (39/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

ACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACG‑G‑CCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288415‑2288688

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACg‑g                                                                                                                                         >  1:773199/1‑140 (MQ=255)

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACg‑g                                                                                                                                         >  2:562507/1‑140 (MQ=255)

aCCGAGACGGTTTGTTCCAAATACCTCCATGGCCCGCGTGGTTTTTTTAATAGCCCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACg‑g                                                                                                                                         <  2:420978/140‑1 (MQ=255)

 ccGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑c                                                                                                                                       <  1:229680/140‑1 (MQ=255)

      aCGTTTTGTCCCGAATCCCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccc                                                                                                                                  <  2:917713/140‑1 (MQ=255)

      aCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccc                                                                                                                                  <  2:330297/140‑1 (MQ=255)

        ggTTTGTTCCGAATCCCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccccc                                                                                                                                <  1:733966/140‑2 (MQ=255)

        ggTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccccc                                                                                                                                <  1:246947/140‑2 (MQ=255)

          tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑ccccccccat                                                                                                                              >  2:78365/1‑137 (MQ=255)

              ttCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCttt                                                                                                                           >  1:145704/1‑140 (MQ=255)

              ttCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccccc                                                                                                                                >  1:28009/1‑133 (MQ=255)

              ttCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccccc                                                                                                                                <  2:28009/134‑2 (MQ=255)

                              ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:18661/140‑1 (MQ=255)

                               gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  2:215517/140‑1 (MQ=255)

                                cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGcgccc                                                                                                         <  2:758151/140‑1 (MQ=255)

                                  cgcgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGcgcccgc                                                                                                       >  1:439175/1‑140 (MQ=255)

                                         ttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAAt                                                                                                <  2:103997/140‑1 (MQ=255)

                                           gttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  2:773199/140‑1 (MQ=255)

                                                 aTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTAt                                                                                        >  2:351064/1‑140 (MQ=255)

                                                     cACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAtt                                                                                    >  1:775143/1‑140 (MQ=255)

                                                      aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc                                                                                   >  2:127699/1‑140 (MQ=255)

                                                      aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc                                                                                   >  1:54024/1‑140 (MQ=255)

                                                      aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc                                                                                   >  1:206992/1‑140 (MQ=255)

                                                       ccGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  <  2:618124/140‑1 (MQ=255)

                                                       ccGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  >  2:972890/1‑140 (MQ=255)

                                                          ccttgttttTGATCTACCCCAAAAGCAAAACCCCCCCCTTTAACCCCCAGTAGCCCCCCCTTTTCGAAAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  2:286549/135‑1 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGTGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               >  1:575282/1‑140 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  2:206992/140‑1 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  2:775143/140‑1 (MQ=255)

                                                             gCTTTCTGATCTGCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcgc                                                                            >  1:177545/1‑140 (MQ=255)

                                                               tttCTGATCTGCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa                                                                          <  2:177545/140‑1 (MQ=255)

                                                                  cTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCCCTGCGCCATaa                                                                       >  1:286549/1‑140 (MQ=255)

                                                                     aTCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  >  2:906094/1‑126 (MQ=255)

                                                                     aTCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  <  1:906094/126‑1 (MQ=255)

                                                                        tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACGCC‑CCCCCCCATCTTTTTCAACGATTAACCGCCCGCCTTTAATCGTGGTATCTTTCGCTCCGCCATAAACCtct                                                                 >  2:384990/1‑138 (MQ=255)

                                                                        tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGt                                                                 >  1:396311/1‑140 (MQ=255)

                                                                         aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  1:204953/125‑1 (MQ=255)

                                                                         aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               >  2:204953/1‑125 (MQ=255)

                                                                         aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  1:687970/133‑1 (MQ=255)

                                                                         aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       >  2:687970/1‑133 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc                                                              >  2:454717/1‑140 (MQ=255)

                                                                            gcaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:54024/140‑1 (MQ=255)

                                                                            gcaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:581550/140‑1 (MQ=255)

                                                                            ccaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:770119/139‑1 (MQ=255)

                                                                            ccaaatgcaaacCCCCCCTCTTTACCCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:637372/139‑1 (MQ=255)

                                                                             caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcac                                                            <  2:145704/140‑1 (MQ=255)

                                                                               aatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCacac                                                          >  1:534428/1‑140 (MQ=255)

                                                                                             ctctTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa                                            >  1:159459/1‑140 (MQ=255)

                                                                                                tttAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTc                                         >  2:285612/1‑140 (MQ=255)

                                                                                                tttAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTc                                         <  1:351064/140‑1 (MQ=255)

                                                                                                  tAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa                                            <  1:274148/135‑1 (MQ=255)

                                                                                                  tAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa                                            >  2:274148/1‑135 (MQ=255)

                                                                                                   aaCCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTgg                                      >  1:339581/1‑140 (MQ=255)

                                                                                                    aCCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTTCGCCATAAACCTGTAGCACACCATTATTGa                                                 >  2:919565/1‑128 (MQ=255)

                                                                                                    aCCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGa                                                 <  1:919565/128‑1 (MQ=255)

                                                                                                        ccAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                                              >  2:119576/1‑127 (MQ=255)

                                                                                                        ccAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                                              <  1:119576/127‑1 (MQ=255)

                                                                                                        ccAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGc                                 >  2:860303/1‑140 (MQ=255)

                                                                                                         cAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc                                >  1:430786/1‑140 (MQ=255)

                                                                                                         cAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc                                >  2:462777/1‑140 (MQ=255)

                                                                                                          agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  2:776197/1‑140 (MQ=255)

                                                                                                          agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               <  1:127699/140‑1 (MQ=255)

                                                                                                          agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  1:460254/1‑140 (MQ=255)

                                                                                                          agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  1:615330/1‑140 (MQ=255)

                                                                                                          agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  2:338652/1‑140 (MQ=255)

                                                                                                            tagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgcg                             <  2:615330/140‑1 (MQ=255)

                                                                                                               ccctccCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          <  2:534428/139‑1 (MQ=255)

                                                                                                               ccctccCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          <  2:396311/139‑1 (MQ=255)

                                                                                                               ccctccCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          >  1:418806/2‑140 (MQ=255)

                                                                                                               ccctccCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          <  1:384990/139‑1 (MQ=255)

                                                                                                                   cccTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCa                      >  2:840649/1‑140 (MQ=255)

                                                                                                                   cccTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCa                      >  1:3677/1‑140 (MQ=255)

                                                                                                                   cccTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCa                      >  1:140988/1‑140 (MQ=255)

                                                                                                                    ccTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     <  1:562507/140‑1 (MQ=255)

                                                                                                                    ccTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     <  1:69471/140‑1 (MQ=255)

                                                                                                                    ccTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     >  1:346933/1‑140 (MQ=255)

                                                                                                                     cTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAtt                    >  1:283498/1‑140 (MQ=255)

                                                                                                                        ttCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCAAACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGa                 >  2:913179/1‑140 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGaa                <  1:285612/140‑1 (MQ=255)

                                                                                                                          cGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  1:572244/140‑1 (MQ=255)

                                                                                                                                cGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTg                  <  2:979340/131‑1 (MQ=255)

                                                                                                                                cGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTg                  >  1:979340/1‑131 (MQ=255)

                                                                                                                                  aCAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGAt       <  1:840649/140‑1 (MQ=255)

                                                                                                                                       gACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:39765/140‑1 (MQ=255)

                                                                                                                                       gACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:972890/140‑1 (MQ=255)

                                                                                                                                       gACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:860303/140‑1 (MQ=255)

                                                                                                                                       gACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:462777/140‑1 (MQ=255)

ACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACG‑G‑CCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288415‑2288688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A