Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 139 58.0 1973578 98.9% 1951868 138.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,511,625 G→A A361V (GCT→GTT)  mntH ← Mn(2(+))/Fe(2(+)): H(+) symporter MntH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,511,6250GA100.0% 238.9 / NA 68A361V (GCT→GTT) mntHMn(2(+))/Fe(2(+)): H(+) symporter MntH
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (32/36);  total (32/36)

AACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGC  >  NC_000913/2511493‑2511760
                                                                                                                                    |                                                                                                                                       
aacaacCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATAcc                                                                                                                                  <  1:157747/140‑1 (MQ=255)
 acaacCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCa                                                                                                                                 <  2:640782/140‑1 (MQ=255)
    acCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAAGGATACCaaaa                                                                                                                              >  1:674434/1‑140 (MQ=255)
    acCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCaaaa                                                                                                                              <  2:889240/140‑1 (MQ=255)
    acCAGATATTAAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCaaaa                                                                                                                              <  1:675529/140‑1 (MQ=255)
     ccAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAAc                                                                                                                             <  1:388680/140‑1 (MQ=255)
       aGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCa                                                                                                                                 <  2:456805/134‑1 (MQ=255)
       aGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCa                                                                                                                                 >  1:456805/1‑134 (MQ=255)
         atatTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTaa                                                                                                                         >  2:209830/1‑140 (MQ=255)
         atatTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTaa                                                                                                                         <  2:799818/140‑1 (MQ=255)
            ttCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTAGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAg                                                                                                                      >  2:881702/1‑140 (MQ=255)
             tCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACt                                                                                                                            <  1:742652/133‑1 (MQ=255)
             tCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACt                                                                                                                            >  2:742652/1‑133 (MQ=255)
             tCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGt                                                                                                                     >  2:766437/1‑140 (MQ=255)
               aGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTAc                                                                                                                   >  2:687976/1‑140 (MQ=255)
               aGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTAc                                                                                                                   >  1:668237/1‑140 (MQ=255)
                 cgcCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCt                                                                                                                 <  1:626749/140‑1 (MQ=255)
                   ccACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGa                                                                                                               <  1:682908/140‑1 (MQ=255)
                    cACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGAc                                                                                                              >  1:18432/1‑140 (MQ=255)
                     aCGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACt                                                                                                             <  1:881702/140‑1 (MQ=255)
                      cGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTc                                                                                                            >  2:419479/1‑140 (MQ=255)
                      cGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTc                                                                                                            >  2:489833/1‑140 (MQ=255)
                       gACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCa                                                                                                           <  1:419479/140‑1 (MQ=255)
                                 acaATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGTAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAAt                                                                                                 >  2:638439/1‑140 (MQ=255)
                                   aaTCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATcc                                                                                               >  1:284176/1‑140 (MQ=255)
                                       aCCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCgtgt                                                                                           <  2:955538/140‑1 (MQ=255)
                                       aCCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCgtgt                                                                                           >  1:955538/1‑140 (MQ=255)
                                       aCCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCgtgt                                                                                           >  1:345719/1‑140 (MQ=255)
                                             ccTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATc                                                                                     >  2:43334/1‑140 (MQ=255)
                                                      tttACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCAt                                                                            <  2:194663/140‑1 (MQ=255)
                                                          cgcgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCa                                                                          <  2:751344/138‑1 (MQ=255)
                                                          cgcgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCa                                                                          >  1:551958/1‑138 (MQ=255)
                                                          cgcgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCa                                                                          >  1:751344/1‑138 (MQ=255)
                                                          cgcgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCa                                                                          <  2:551958/138‑1 (MQ=255)
                                                          cgcgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGa                                                                        >  2:903092/1‑140 (MQ=255)
                                                          cgcgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGa                                                                        >  1:895884/1‑140 (MQ=255)
                                                            cgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGTAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAAt                                                                      <  1:638439/140‑1 (MQ=255)
                                                              tttGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGa                                                                    <  2:345719/140‑1 (MQ=255)
                                                               ttGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGAc                                                                   >  2:207637/1‑140 (MQ=255)
                                                               ttGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGAc                                                                   >  2:433747/1‑140 (MQ=255)
                                                                  cTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAAt                                                                <  2:18432/140‑1 (MQ=255)
                                                                      tCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAAt                                                            <  2:821161/140‑1 (MQ=255)
                                                                      tCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCAGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAAt                                                            <  1:209830/140‑1 (MQ=255)
                                                                       cACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATg                                                           >  1:277719/1‑140 (MQ=255)
                                                                        aCCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGa                                                          <  2:284176/140‑1 (MQ=255)
                                                                        aCCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGa                                                          <  1:687976/140‑1 (MQ=255)
                                                                          cAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACg                                                        <  1:903092/140‑1 (MQ=255)
                                                                            gATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGc                                                      <  2:512653/140‑1 (MQ=255)
                                                                                 cccATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACAt                                                 >  2:362691/1‑140 (MQ=255)
                                                                                 cccATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACAt                                                 >  1:950241/1‑140 (MQ=255)
                                                                                    aTCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGt                                              <  2:484320/140‑1 (MQ=255)
                                                                                    aTCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGt                                              <  1:433747/140‑1 (MQ=255)
                                                                                               gTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTacgac                                   <  2:347980/140‑1 (MQ=255)
                                                                                                tCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTacgacg                                  <  2:950241/140‑1 (MQ=255)
                                                                                                      gTGAAAATCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCca                            >  1:789445/1‑140 (MQ=255)
                                                                                                         aaaaTCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAg                         <  2:167951/140‑1 (MQ=255)
                                                                                                         aaaaTCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAg                         <  1:766437/140‑1 (MQ=255)
                                                                                                           aaTCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCg                       <  1:489833/140‑1 (MQ=255)
                                                                                                           aaTCAGCAGTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCg                       <  1:589436/140‑1 (MQ=255)
                                                                                                                gcagTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGata                  >  1:829623/1‑140 (MQ=255)
                                                                                                                gcagTGGAACCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGata                  >  2:238124/1‑140 (MQ=255)
                                                                                                                       aaCCAGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGc           <  2:668237/140‑1 (MQ=255)
                                                                                                                           aGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAAt       >  1:635287/1‑140 (MQ=255)
                                                                                                                           aGCGCCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAAt       >  1:265933/1‑140 (MQ=255)
                                                                                                                             cgcCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATg      >  1:403328/1‑139 (MQ=255)
                                                                                                                             cgcCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATg      <  2:403328/139‑1 (MQ=255)
                                                                                                                              gcCAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGaa    >  1:865048/1‑140 (MQ=255)
                                                                                                                                cAGAACGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGc  <  1:362691/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                       
AACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGC  >  NC_000913/2511493‑2511760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A