Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A18 F30 I1 R1	22	76.3	2574204	99.1%	2551036	139.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,494,239	C→A	L77M (CTG→ATG)	nirB →	nitrite reductase catalytic subunit NirB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,494,239	0	C	A	100.0%	282.7 / NA	80	L77M (CTG→ATG)	nirB	nitrite reductase catalytic subunit NirB
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (38/42); total (38/42)

ACCGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTCTGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCAATCAAAGGTTCTG  >  NC_000913/3494110‑3494374

aCCGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGa                                                                                                                               >  2:1202525/1‑140 (MQ=255)

aCCGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGa                                                                                                                               >  2:455455/1‑140 (MQ=255)

aCCGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGa                                                                                                                               >  2:862367/1‑140 (MQ=255)

 ccGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGaa                                                                                                                              <  2:328646/140‑1 (MQ=255)

 ccGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGaa                                                                                                                              <  1:428246/140‑1 (MQ=255)

 ccGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGaa                                                                                                                              >  1:456182/1‑140 (MQ=255)

 ccGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCCGCGaa                                                                                                                              <  2:963034/140‑1 (MQ=255)

    ttttCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAAcgc                                                                                                                           >  2:26155/1‑140 (MQ=255)

     tttCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAAcgcg                                                                                                                          <  1:288505/140‑1 (MQ=255)

     tttCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAAcgcg                                                                                                                          >  2:625327/1‑140 (MQ=255)

     tttCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAAcgcg                                                                                                                          <  1:1152095/140‑1 (MQ=255)

       tCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCt                                                                                                                        >  1:463993/1‑140 (MQ=255)

         tgtgAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCt                                                                                                                        >  1:297563/1‑138 (MQ=255)

         tgtgAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCt                                                                                                                        <  2:297563/138‑1 (MQ=255)

                 aCCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCa                                                                                                              <  1:1236786/140‑1 (MQ=255)

                 aCCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCa                                                                                                              <  1:1093939/140‑1 (MQ=255)

                     cgcATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCg                                                                                                          >  1:408106/1‑140 (MQ=255)

                     cgcATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCg                                                                                                          >  1:547688/1‑140 (MQ=255)

                       cATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTc                                                                                                        >  2:655201/1‑140 (MQ=255)

                           gCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGga                                                                                                    <  2:22579/140‑1 (MQ=255)

                                  aCCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTg                                                                                             <  1:26155/140‑1 (MQ=255)

                                    cgcgTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGAt                                                                                           >  2:1136633/1‑140 (MQ=255)

                                     gcgTACACCTCTCGTCTTACTTCTCTAACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGAtt                                                                                          <  1:331706/140‑1 (MQ=255)

                                         acacCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACt                                                                                      <  1:119344/140‑1 (MQ=255)

                                          cacCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTc                                                                                     <  2:1038095/140‑1 (MQ=255)

                                          cacCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTc                                                                                     <  2:860536/140‑1 (MQ=255)

                                             ctctCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAg                                                                                  >  1:887366/1‑140 (MQ=255)

                                               ctcGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAgcg                                                                                <  2:131633/140‑1 (MQ=255)

                                               ctcGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAgcg                                                                                >  1:639540/1‑140 (MQ=255)

                                                tcGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAgcgc                                                                               >  1:866652/1‑140 (MQ=255)

                                                       aCTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAgcgc                                                                               >  1:211945/1‑133 (MQ=255)

                                                       aCTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAgcgc                                                                               <  2:211945/133‑1 (MQ=255)

                                                       aCTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGt                                                                        >  1:732185/1‑140 (MQ=255)

                                                       aCTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGt                                                                        >  1:818297/1‑140 (MQ=255)

                                                       aCTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGt                                                                        >  2:989579/1‑140 (MQ=255)

                                                        cTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTa                                                                       >  2:1011161/1‑140 (MQ=255)

                                                          tctctcACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAGGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTAcc                                                                     >  2:20180/1‑140 (MQ=255)

                                                               caccacACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGtttt                                                                <  2:508468/140‑1 (MQ=255)

                                                                accacACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGttttt                                                               >  1:1239403/1‑140 (MQ=255)

                                                                  cacaCCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCg                                                                    <  1:1166144/133‑1 (MQ=255)

                                                                  cacaCCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCg                                                                    >  2:1166144/1‑133 (MQ=255)

                                                                   acacCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTAt                                                            >  1:475610/1‑140 (MQ=255)

                                                                    cacCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATg                                                           <  1:1036955/140‑1 (MQ=255)

                                                                    cacCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATg                                                           <  2:475610/140‑1 (MQ=255)

                                                                     acCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGa                                                          >  2:446243/1‑140 (MQ=255)

                                                                     acCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGa                                                          <  2:315437/140‑1 (MQ=255)

                                                                     acCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGa                                                          <  1:862367/140‑1 (MQ=255)

                                                                     acCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGa                                                          >  1:299973/1‑140 (MQ=255)

                                                                     acCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGa                                                          <  2:299973/140‑1 (MQ=255)

                                                                     acCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGa                                                          >  2:79509/1‑140 (MQ=255)

                                                                     acCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGa                                                          <  1:104637/140‑1 (MQ=255)

                                                                      ccgccgAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGAc                                                         <  2:278151/140‑1 (MQ=255)

                                                                         ccgAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAg                                                      <  1:655201/140‑1 (MQ=255)

                                                                         ccgAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAg                                                      <  2:490213/140‑1 (MQ=255)

                                                                            aaGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACAATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTg                                                   >  2:1129419/1‑140 (MQ=255)

                                                                             agagCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGa                                                  <  2:1233453/140‑1 (MQ=255)

                                                                               agCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATc                                                >  1:181347/1‑140 (MQ=255)

                                                                                 cTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGGTTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCAt                                              >  2:1039531/1‑140 (MQ=255)

                                                                                  tGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATg                                             <  1:79509/140‑1 (MQ=255)

                                                                                   gTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTTGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATgg                                            >  1:1006146/1‑140 (MQ=255)

                                                                                   gTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATgg                                            <  2:408106/140‑1 (MQ=255)

                                                                                    tCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGc                                           >  1:1155310/1‑140 (MQ=255)

                                                                                           tGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGt                                    <  1:455455/140‑1 (MQ=255)

                                                                                              gcgAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTcc                                 <  2:815186/140‑1 (MQ=255)

                                                                                              gcgAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTcc                                 <  1:412432/140‑1 (MQ=255)

                                                                                              gcgAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTcc                                 <  2:866652/140‑1 (MQ=255)

                                                                                              gcgAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTcc                                 <  1:1202525/140‑1 (MQ=255)

                                                                                               cgAAGGCTTCTACGAGAAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCt                                <  2:818297/140‑1 (MQ=255)

                                                                                                              gaAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGAt                      >  1:1019111/1‑135 (MQ=255)

                                                                                                              gaAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGAt                      <  2:1019111/135‑1 (MQ=255)

                                                                                                              gaAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGc                 >  2:574250/1‑140 (MQ=255)

                                                                                                              gaAACACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGc                 >  1:237640/1‑140 (MQ=255)

                                                                                                                aaCACGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCa               <  2:1239403/140‑1 (MQ=255)

                                                                                                                 acacGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCaa              >  1:666437/1‑140 (MQ=255)

                                                                                                                    cGGCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCAATCa           <  2:237640/140‑1 (MQ=255)

                                                                                                                     ggCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCAATCaa          >  2:603634/1‑140 (MQ=255)

                                                                                                                     ggCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCAATCaa          >  2:998674/1‑140 (MQ=255)

                                                                                                                      gCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTGCCCGTGGATCCCGCCAATCaaa         <  2:181347/140‑1 (MQ=255)

                                                                                                                      gCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCa               >  2:1196020/1‑134 (MQ=255)

                                                                                                                      gCATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCa               <  1:1196020/134‑1 (MQ=255)

                                                                                                                       cATCAAAGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCCCTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCACCCGGTTCCTA‑CCGTGGATCCCGCCAATCAAAgg       <  2:463993/140‑1 (MQ=255)

                                                                                                                           aaaGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCAATCAAAGGTTc    <  2:639540/140‑1 (MQ=255)

                                                                                                                             aGTTATGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGGTTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCAATCAAAGGTTCTg  <  1:1039531/140‑1 (MQ=255)

ACCGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGTACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAGAAACACGGCATCAAAGTTCTGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACTCCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCCAATCAAAGGTTCTG  >  NC_000913/3494110‑3494374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A