Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F30 I1 R1 25 63.6 2147816 99.4% 2134929 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,080,048 G→T intergenic (+79/+251) yiiF → / ← fdhE protein YiiF/formate dehydrogenase formation protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,080,0480GT100.0% 299.8 / NA 85intergenic (+79/+251)yiiF/fdhEprotein YiiF/formate dehydrogenase formation protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (36/49);  total (36/49)

AGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATT  >  NC_000913/4079915‑4080178
                                                                                                                                     |                                                                                                                                  
aGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                                                                                                                              <  2:766154/140‑1 (MQ=255)
      tgAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCg                                                                                                                        >  2:515817/1‑140 (MQ=255)
       gAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGt                                                                                                                       >  2:663794/1‑140 (MQ=255)
              aTGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                                                                                                                              <  1:511823/126‑1 (MQ=255)
              aTGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                                                                                                                              >  2:511823/1‑126 (MQ=255)
              aTGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAAtt                                                                                                                >  2:308306/1‑140 (MQ=255)
              aTGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAAtt                                                                                                                >  1:34216/1‑140 (MQ=255)
                ggTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCa                                                                                                              <  2:782249/140‑1 (MQ=255)
                  tgtCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCa                                                                                                              <  2:270678/138‑1 (MQ=255)
                  tgtCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCa                                                                                                              >  1:270678/1‑138 (MQ=255)
                  tgtCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAAt                                                                                                            >  2:177162/1‑140 (MQ=255)
                  tgtCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAAt                                                                                                            >  2:287809/1‑140 (MQ=255)
                    tCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGt                                                                                                          >  1:883242/1‑140 (MQ=255)
                       aaTATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCa                                                                                                              <  1:86736/133‑1 (MQ=255)
                       aaTATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCa                                                                                                              >  2:86736/1‑133 (MQ=255)
                       aaTATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTAtt                                                                                                       >  2:755957/1‑140 (MQ=255)
                       aaTATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTAtt                                                                                                       >  2:45781/1‑140 (MQ=255)
                         tatCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGc                                                                                                     <  1:1016189/140‑1 (MQ=255)
                           tCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAg                                                                                                   <  2:588269/140‑1 (MQ=255)
                            cAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGt                                                                                                  >  1:688754/1‑140 (MQ=255)
                              gCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGttt                                                                                                <  2:233899/140‑1 (MQ=255)
                              gCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGttt                                                                                                <  2:654203/140‑1 (MQ=255)
                                gTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTAt                                                                                              >  1:832413/1‑140 (MQ=255)
                                 tAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTAtt                                                                                             >  2:434265/1‑140 (MQ=255)
                                 tAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCGTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTAtt                                                                                             >  2:866216/1‑140 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  2:528857/140‑1 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  1:23635/140‑1 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           >  2:23635/1‑140 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  1:287809/140‑1 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  1:308306/140‑1 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  1:849026/140‑1 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  2:832413/140‑1 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  1:434265/140‑1 (MQ=255)
                                   aGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCGTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  1:866216/140‑1 (MQ=255)
                                     cTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTa                                                                                         <  2:892280/140‑1 (MQ=255)
                                      tGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAg                                                                                        <  1:177162/140‑1 (MQ=255)
                                      tGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAg                                                                                        >  2:617566/1‑140 (MQ=255)
                                        cgcgAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGc                                                                                      >  1:337823/1‑140 (MQ=255)
                                         gcgAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGcc                                                                                     >  1:272504/1‑140 (MQ=255)
                                           gAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           >  1:257591/1‑132 (MQ=255)
                                           gAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTgg                                                                                           <  2:257591/132‑1 (MQ=255)
                                                  ggTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcg                                                                            <  2:337823/140‑1 (MQ=255)
                                                    tAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcgca                                                                          <  2:836908/140‑1 (MQ=255)
                                                    tAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcgca                                                                          <  1:609299/140‑1 (MQ=255)
                                                         ggAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAgcgcagcgca                                                                     >  2:1050169/1‑140 (MQ=255)
                                                         ggAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAgcgcagcgca                                                                     <  1:1050169/140‑1 (MQ=255)
                                                           aaaaaaTGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATc                                                                   <  1:963644/140‑1 (MQ=255)
                                                            aaaaaTGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCa                                                                  >  2:287692/1‑140 (MQ=255)
                                                              aaaTGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAgg                                                                <  1:540328/140‑1 (MQ=255)
                                                              aaaTGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAgg                                                                <  1:184102/140‑1 (MQ=255)
                                                              aaaTGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAgg                                                                <  1:832813/140‑1 (MQ=255)
                                                                          tCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCt                                                    <  2:272504/140‑1 (MQ=255)
                                                                              aTTGCTGACAACGTGTGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTa                                                        >  1:189390/1‑132 (MQ=255)
                                                                              aTTGCTGACAACGTGTGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTa                                                        <  2:189390/132‑1 (MQ=255)
                                                                                tGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGtcat                                              <  2:350564/140‑1 (MQ=255)
                                                                                 gCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGtcatc                                             <  2:883242/140‑1 (MQ=255)
                                                                                  cTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGtcatca                                            >  2:1035230/1‑140 (MQ=255)
                                                                                        aCGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCa                                      >  1:945768/1‑140 (MQ=255)
                                                                                        aCGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCa                                      <  2:649905/140‑1 (MQ=255)
                                                                                        aCGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAAGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCa                                      >  2:269322/1‑140 (MQ=255)
                                                                                           tGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGc                                   >  1:902270/1‑140 (MQ=255)
                                                                                            gcgcGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGcc                                  >  2:37167/1‑140 (MQ=255)
                                                                                            gcgcGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGcc                                  >  2:742366/1‑140 (MQ=255)
                                                                                            gcgcGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGcc                                  >  1:1000520/1‑140 (MQ=255)
                                                                                            gcgcGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGcc                                  >  2:559726/1‑140 (MQ=255)
                                                                                              gcgTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCa                                <  2:897960/140‑1 (MQ=255)
                                                                                               cgTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCAt                               <  2:902270/140‑1 (MQ=255)
                                                                                                 ttgttCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATaa                             <  1:287692/140‑1 (MQ=255)
                                                                                                 ttgttCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATaa                             <  2:34216/140‑1 (MQ=255)
                                                                                                 ttgttCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATaa                             <  1:515817/140‑1 (MQ=255)
                                                                                                 ttgttCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATaa                             <  2:246566/140‑1 (MQ=255)
                                                                                                    ttCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCt                          <  2:512385/140‑1 (MQ=255)
                                                                                                    ttCATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCt                          <  1:617566/140‑1 (MQ=255)
                                                                                                       aTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTAt                       <  1:1035230/140‑1 (MQ=255)
                                                                                                            ggATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAtg                  <  2:502964/140‑1 (MQ=255)
                                                                                                            ggATGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATCGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAtg                  <  2:339829/140‑1 (MQ=255)
                                                                                                              aTGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAtgtg                >  2:231061/1‑140 (MQ=255)
                                                                                                              aTGCGGCGTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAtgtg                >  1:238131/1‑140 (MQ=255)
                                                                                                                  ggcgTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtggtgg            <  1:559726/140‑1 (MQ=255)
                                                                                                                  ggcgTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtggtgg            <  1:45781/140‑1 (MQ=255)
                                                                                                                   gcgTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAtg                  >  1:562561/1‑133 (MQ=255)
                                                                                                                   gcgTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGAtg                  <  2:562561/133‑1 (MQ=255)
                                                                                                                    cgTGAACGCCTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtggtggtg          <  2:238131/140‑1 (MQ=255)
                                                                                                                            ccTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAAtt  >  2:146341/1‑140 (MQ=255)
                                                                                                                            ccTTATCCGTCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAAtt  <  1:945663/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                  
AGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGGAAAAAATGATGTCAATCAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATT  >  NC_000913/4079915‑4080178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A