Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F30 I1 R1 25 63.6 2147816 99.4% 2134929 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,143,491 C→A A321D (GCT→GAT)  frwC → putative PTS enzyme IIC component FrwC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,143,4910CA100.0% 214.8 / NA 62A321D (GCT→GAT) frwCputative PTS enzyme IIC component FrwC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (36/26);  total (36/26)

CTTCCATCATGGTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGCTGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAAATTAATTAATTGAGGAACGAGCCA  >  NC_000913/4143359‑4143624
                                                                                                                                    |                                                                                                                                     
cttccATCATGGTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGa                                                                                                                                <  1:373546/140‑1 (MQ=255)
cttccATCATGGTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGa                                                                                                                                >  1:301354/1‑140 (MQ=255)
  tccATCATGGTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGc                                                                                                                              >  2:614324/1‑140 (MQ=255)
          ggTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGa                                                                                                                      >  1:482192/1‑140 (MQ=255)
          ggTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGa                                                                                                                      >  1:625595/1‑140 (MQ=255)
           gTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAgtggtg                                                                                                                       <  1:503671/138‑1 (MQ=255)
           gTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAgtggtg                                                                                                                       >  2:503671/1‑138 (MQ=255)
           gTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGAc                                                                                                                     <  1:1059938/140‑1 (MQ=255)
               gTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCt                                                                                                                 >  2:1065077/1‑140 (MQ=255)
                ttCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTg                                                                                                                <  2:301354/140‑1 (MQ=255)
                ttCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTg                                                                                                                <  1:733997/140‑1 (MQ=255)
                 tCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAg                                                                                                                               <  2:477449/124‑1 (MQ=255)
                 tCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAg                                                                                                                               >  1:477449/1‑124 (MQ=255)
                 tCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGt                                                                                                               >  2:157138/1‑140 (MQ=255)
                          ggtgCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGaa                                                                                                      >  1:55143/1‑140 (MQ=255)
                            tgCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACg                                                                                                    <  2:625595/140‑1 (MQ=255)
                               aGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGc                                                                                                 >  1:631962/1‑140 (MQ=255)
                                gTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCt                                                                                                <  2:55143/140‑1 (MQ=255)
                                 tAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTg                                                                                               >  2:963251/1‑140 (MQ=255)
                                  aaCTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGa                                                                                              <  1:157138/140‑1 (MQ=255)
                                      gcggcgCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAg                                                                                          >  2:500616/1‑140 (MQ=255)
                                      gcggcgCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAg                                                                                          >  2:103642/1‑140 (MQ=255)
                                      gcggcgCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAg                                                                                          >  2:811336/1‑140 (MQ=255)
                                         gcgcTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAAc                                                                                                     <  1:453353/126‑1 (MQ=255)
                                         gcgcTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAAc                                                                                                     >  2:453353/1‑126 (MQ=255)
                                                      cgcAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAAt                                                                          <  1:951367/140‑1 (MQ=255)
                                                      cgcAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAAt                                                                          <  1:486734/140‑1 (MQ=255)
                                                           tGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTc                                                                     >  1:783442/1‑140 (MQ=255)
                                                             cTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCtt                                                                   >  1:1011763/1‑140 (MQ=255)
                                                                tGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGa                                                                <  1:811336/140‑1 (MQ=255)
                                                                 gCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGAc                                                               <  1:1065077/140‑1 (MQ=255)
                                                                     gCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGa                                                                <  2:167215/135‑1 (MQ=255)
                                                                     gCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGa                                                                >  1:167215/1‑135 (MQ=255)
                                                                     gCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACtgat                                                           >  2:1009951/1‑140 (MQ=255)
                                                                     gCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACtgat                                                           >  2:517002/1‑140 (MQ=255)
                                                                       tGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACtgatga                                                         >  1:761293/1‑140 (MQ=255)
                                                                          ggtggtCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGaaaa                                                      >  2:1006824/1‑140 (MQ=255)
                                                                          ggtggtCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGaaaa                                                      >  1:662125/1‑140 (MQ=255)
                                                                               tCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAaagaag                                                 >  1:138581/1‑140 (MQ=255)
                                                                                cTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAagaaga                                                <  2:631962/140‑1 (MQ=255)
                                                                                cTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAagaaga                                                <  1:1009951/140‑1 (MQ=255)
                                                                                    ttGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAgacgac                                            <  1:103642/140‑1 (MQ=255)
                                                                                         ctgcCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCtggg                                       >  2:424473/1‑139 (MQ=255)
                                                                                         ctgcCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCtgga                                       >  1:157208/1‑140 (MQ=255)
                                                                                            ccGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAagaaga                                                >  1:739928/1‑128 (MQ=255)
                                                                                            ccGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAagaaga                                                <  2:739928/128‑1 (MQ=255)
                                                                                             cGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCtggaattg                                   >  2:29156/1‑140 (MQ=255)
                                                                                                 ggtTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCtggatttggatt                               >  2:896555/1‑140 (MQ=255)
                                                                                                   ttGAAGGCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGAtttt                             <  2:1011763/140‑1 (MQ=255)
                                                                                                         gCAAGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaatt                       >  1:1032918/1‑140 (MQ=255)
                                                                                                           aaGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaattaa                     >  2:21929/1‑140 (MQ=255)
                                                                                                            aGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaattaat                    <  1:614324/140‑1 (MQ=255)
                                                                                                            aGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaattaat                    <  1:21929/140‑1 (MQ=255)
                                                                                                            aGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaattaat                    <  2:761293/140‑1 (MQ=255)
                                                                                                            aGCTGGGTTATATCGCAGCAGTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaattaat                    <  1:1006824/140‑1 (MQ=255)
                                                                                                            aGCTGGGTTATATCGCAGCAGTGGATGACGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaattaat                    >  1:916861/1‑140 (MQ=255)
                                                                                                            aGCTGGGTTATATCGCAGCAGTGGATGACGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaattaat                    <  2:916861/140‑1 (MQ=255)
                                                                                                                gggTTATATCGCAGCAGTGGATGTCGGCGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAaattaattaat                >  1:712524/1‑140 (MQ=255)
                                                                                                                           cagcagTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAAATTAATTAATTGAGGAACGAg     >  1:535922/1‑140 (MQ=255)
                                                                                                                           cagcagTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAAATTAATTAATTGAGGAACGAg     >  1:591225/1‑140 (MQ=255)
                                                                                                                            agcagTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAAATTAATTAATTGAGGAACGAGc    >  1:427279/1‑140 (MQ=255)
                                                                                                                              cagTGGATGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAAATTAATTAATTGAGGAACGAGCCa  <  1:209221/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                     
CTTCCATCATGGTCGGTTCAGTTTGTGGTGCAGTAACTGCGGCGCTGGTCGGTGCGCAGTGCTATGCAGGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGCAAGCTGGGTTATATCGCAGCAGTGGCTGTCGGAGCAGTGGTGACGGCTGTTTGTGTGAACGTGCTGAAAAGTCTGGCGCGTAAAAATGGGTCTTCGACTGATGAAAAAGAAGACGACCTGGATTTGGATTTTGAAATTAATTAATTGAGGAACGAGCCA  >  NC_000913/4143359‑4143624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A