Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A43 F30 I1 R1	24	129.9	4391548	99.4%	4365198	139.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,118,732	C→A	A127A (GCG→GCT)	yghJ ←	putative lipoprotein YghJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,118,732	0	C	A	100.0%	472.9 / NA	130	A127A (GCG→GCT)	yghJ	putative lipoprotein YghJ
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (50/80); total (50/80)

Only 100 of 130 total aligned reads displayed.

AAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTC  >  NC_000913/3118596‑3118866

aaaCCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGcc                                                                                                                                     >  1:1872306/1‑140 (MQ=255)

 aaCCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCa                                                                                                                                    <  2:1483425/140‑1 (MQ=255)

 aaCCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCa                                                                                                                                    <  1:181498/140‑1 (MQ=255)

 aaCCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACACAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCa                                                                                                                                    <  1:415002/140‑1 (MQ=255)

  aCCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCAc                                                                                                                                   >  1:1263144/1‑140 (MQ=255)

   ccGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACg                                                                                                                                  <  1:343610/140‑1 (MQ=255)

   ccGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACg                                                                                                                                  <  2:795694/140‑1 (MQ=255)

    cGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGc                                                                                                                                 <  2:977813/140‑1 (MQ=255)

      cATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCaa                                                                                                                               <  2:390010/140‑1 (MQ=255)

      cATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCaa                                                                                                                               >  2:1337310/1‑140 (MQ=255)

         tGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTa                                                                                                                            <  2:1334934/140‑1 (MQ=255)

              ttCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTc                                                                                                                       <  1:1982705/140‑1 (MQ=255)

                  tGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCg                                                                                                                   <  1:903760/140‑1 (MQ=255)

                  tGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCg                                                                                                                   <  2:1099032/140‑1 (MQ=255)

                   gTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGc                                                                                                                  <  1:1201737/140‑1 (MQ=255)

                   gTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGc                                                                                                                  <  1:745052/140‑1 (MQ=255)

                   gTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGc                                                                                                                  >  2:2160578/1‑140 (MQ=255)

                   gTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGc                                                                                                                  <  2:1168866/140‑1 (MQ=255)

                   gTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGc                                                                                                                  <  2:2040327/140‑1 (MQ=255)

                    tCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGcc                                                                                                                 <  1:933066/140‑1 (MQ=255)

                     cATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTc                                                                                                                       <  1:664465/133‑1 (MQ=255)

                     cATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTc                                                                                                                       >  2:664465/1‑133 (MQ=255)

                     cATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCa                                                                                                                <  1:474186/140‑1 (MQ=255)

                         ggAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGtt                                                                                                            <  1:1337310/140‑1 (MQ=255)

                          gAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGttt                                                                                                           <  1:693618/140‑1 (MQ=255)

                          gAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGttt                                                                                                           <  1:1220734/140‑1 (MQ=255)

                          gAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGttt                                                                                                           <  1:1631609/140‑1 (MQ=255)

                          gAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATAGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGttt                                                                                                           <  1:38366/140‑1 (MQ=255)

                           aGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTa                                                                                                          <  2:559412/140‑1 (MQ=255)

                             cccGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTaaa                                                                                                        >  2:1864516/1‑140 (MQ=255)

                                 ccAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTa                                                                                                    <  1:340344/140‑1 (MQ=255)

                                     ttCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGc                                                                                                <  1:1137423/140‑1 (MQ=255)

                                         tGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATc                                                                                            >  1:1874374/1‑140 (MQ=255)

                                          gcgcGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTGGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCg                                                                                           <  2:838963/140‑1 (MQ=255)

                                          gcgcGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCg                                                                                           >  1:824295/1‑140 (MQ=255)

                                          gcgcGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCg                                                                                           >  2:1435142/1‑140 (MQ=255)

                                          gcgcGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCg                                                                                           <  2:286329/140‑1 (MQ=255)

                                          gcgcGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCC‑GGTTTAAATGTAAAGCCATCGc                                                                                          <  2:1425972/140‑1 (MQ=255)

                                            gcgTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCt                                                                                         <  2:2039962/140‑1 (MQ=255)

                                               tCCTCAAGGCTAAACGACTCTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGa                                                                                      <  2:289473/140‑1 (MQ=255)

                                               tCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGa                                                                                      <  2:892464/140‑1 (MQ=255)

                                               tCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGa                                                                                      <  2:615080/140‑1 (MQ=255)

                                               tCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGa                                                                                      <  1:1954431/140‑1 (MQ=255)

                                                 cTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGAtt                                                                                    <  2:851355/140‑1 (MQ=255)

                                                 cTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGAtt                                                                                    <  1:768738/140‑1 (MQ=255)

                                                   cAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCa                                                                                  <  2:676891/140‑1 (MQ=255)

                                                   cAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCa                                                                                  <  1:284759/140‑1 (MQ=255)

                                                   cAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCa                                                                                  <  1:914570/140‑1 (MQ=255)

                                                   cAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCa                                                                                  <  2:579110/140‑1 (MQ=255)

                                                      ggCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCa                                                                               >  1:1302957/1‑140 (MQ=255)

                                                         tAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTa                                                                            <  2:851141/140‑1 (MQ=255)

                                                          aaaCGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTAc                                                                           <  2:824295/140‑1 (MQ=255)

                                                           aaCGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCGATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACa                                                                          >  2:1634287/1‑140 (MQ=255)

                                                           aaCGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACa                                                                          >  1:1266984/1‑140 (MQ=255)

                                                           aaCGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACa                                                                          <  1:2511/140‑1 (MQ=255)

                                                            aCGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCt                                                                                         >  2:898491/1‑124 (MQ=255)

                                                                cacTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTa                                                                            <  2:517941/133‑1 (MQ=255)

                                                                cacTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAg                                                                     <  2:1601881/140‑1 (MQ=255)

                                                                cacTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAg                                                                     <  2:1831912/140‑1 (MQ=255)

                                                                cacTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAg                                                                     <  2:401011/140‑1 (MQ=255)

                                                                cacTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAg                                                                     >  2:397993/1‑140 (MQ=255)

                                                                 acTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGc                                                                    >  2:286016/1‑140 (MQ=255)

                                                                             gcacgcaAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCg                                                        >  2:797977/1‑140 (MQ=255)

                                                                              cacgcaAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGc                                                       >  2:1051080/1‑140 (MQ=255)

                                                                                cgcaAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTg                                                     >  2:1021528/1‑140 (MQ=255)

                                                                                         cgcgCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGcc                                            <  2:1263144/140‑1 (MQ=255)

                                                                                         cgcgCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGcc                                            <  1:231029/140‑1 (MQ=255)

                                                                                          gcgcAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGccc                                           <  1:1816787/140‑1 (MQ=255)

                                                                                          gcgcAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGccc                                           <  1:1979253/140‑1 (MQ=255)

                                                                                           cgcAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCa                                          >  1:1353257/1‑140 (MQ=255)

                                                                                            gcAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAg                                         <  1:1886467/140‑1 (MQ=255)

                                                                                             cAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAgg                                        <  2:1493732/140‑1 (MQ=255)

                                                                                             cAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAgg                                        >  1:649056/1‑140 (MQ=255)

                                                                                             cAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAAGTAGCACCAGTTACCCGCTGGCTTCCGCCCAgg                                        <  1:1803919/140‑1 (MQ=255)

                                                                                               gCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAATGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGt                                      >  1:1458866/1‑140 (MQ=255)

                                                                                               gCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGt                                      >  2:533672/1‑140 (MQ=255)

                                                                                               gCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGt                                      >  1:1538949/1‑140 (MQ=255)

                                                                                               gCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGt                                      >  2:1335716/1‑140 (MQ=255)

                                                                                                cTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTc                                     >  1:1188079/1‑140 (MQ=255)

                                                                                                 ttCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCa                                    <  1:533672/140‑1 (MQ=255)

                                                                                                    tgactgaGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGAt                                 <  1:1445980/140‑1 (MQ=255)

                                                                                                      actgaGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGccc                                           >  1:453658/1‑128 (MQ=255)

                                                                                                       ctgaGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAAc                              <  2:1538949/140‑1 (MQ=255)

                                                                                                          aGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCg                           >  1:692663/1‑140 (MQ=255)

                                                                                                          aGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCg                           <  1:1435142/140‑1 (MQ=255)

                                                                                                          aGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCg                           >  1:1883379/1‑140 (MQ=255)

                                                                                                          aGTGTTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCg                           >  1:1561870/1‑140 (MQ=255)

                                                                                                          aGTGTTGAAGGTGGCAATTGTCGTGTCACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCg                           >  2:810078/1‑140 (MQ=255)

                                                                                                            tgtTGAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGtt                         <  2:692663/140‑1 (MQ=255)

                                                                                                                gAAGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCg                     <  2:1872306/140‑1 (MQ=255)

                                                                                                                 aaGGTGGCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGt                    <  2:1943617/140‑1 (MQ=255)

                                                                                                                      ggCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGaa               >  2:1188015/1‑140 (MQ=255)

                                                                                                                      ggCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGaa               >  2:112136/1‑140 (MQ=255)

                                                                                                                      ggCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGaa               <  1:328032/140‑1 (MQ=255)

                                                                                                                       gCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAAc              >  2:631272/1‑140 (MQ=255)

                                                                                                                       gCAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAAc              <  2:483399/140‑1 (MQ=255)

                                                                                                                        cAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACa             >  1:1487297/1‑140 (MQ=255)

                                                                                                                        cAATTGTCGTGTTACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACa             >  1:684222/1‑140 (MQ=255)

                                                                                                                                   ttACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTc  <  1:854349/140‑1 (MQ=255)

                                                                                                                                   ttACCAGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTc  <  1:1335716/140‑1 (MQ=255)

AAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACTTTTTCAACCGCACGCAAGCTACGCGCAGCTTCTGACTGAGTGTTGAAGGTGGCAATTGTCGTGTTACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTC  >  NC_000913/3118596‑3118866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A