Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A27 F30 I1 R1	23	104.4	3531544	99.3%	3506823	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,496,532	G→T	T296T (ACG→ACT)	lpxP →	palmitoleoyl acyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,496,532	0	G	T	100.0%	356.8 / NA	100	T296T (ACG→ACT)	lpxP	palmitoleoyl acyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (52/48); total (52/48)

Only 100 of 106 total aligned reads displayed.

CGTTTGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACGCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATC  >  NC_000913/2496395‑2496660

cGTTTGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAActcg                                                                                                                                >  2:207601/1‑140 (MQ=255)

 gTTTGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACtcgc                                                                                                                               <  2:430899/140‑1 (MQ=255)

 gTTTGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACtcgc                                                                                                                               >  1:817321/1‑140 (MQ=255)

 gTTTGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACtcgc                                                                                                                               <  2:506845/140‑1 (MQ=255)

  tttGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGcc                                                                                                                              <  1:767871/140‑1 (MQ=255)

  tttGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGcc                                                                                                                              <  2:1578224/140‑1 (MQ=255)

   ttGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAActcg                                                                                                                                <  1:1750415/137‑1 (MQ=255)

   ttGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAActcg                                                                                                                                >  2:1750415/1‑137 (MQ=255)

      ttCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCggg                                                                                                                          >  2:1312812/1‑139 (MQ=255)

          tcaCCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGga                                                                                                                      >  2:251216/1‑140 (MQ=255)

            aCCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGgaga                                                                                                                    <  2:306603/140‑1 (MQ=255)

              cccAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAAt                                                                                                                  <  2:817321/140‑1 (MQ=255)

                cAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAAtcg                                                                                                                >  1:1422913/1‑140 (MQ=255)

                cAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAAtcg                                                                                                                <  1:160819/140‑1 (MQ=255)

                     aTGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGtt                                                                                                           >  2:1479951/1‑140 (MQ=255)

                     aTGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGtt                                                                                                           <  1:507159/140‑1 (MQ=255)

                     aTGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGtt                                                                                                           >  2:1663891/1‑140 (MQ=255)

                      tGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTg                                                                                                          <  2:255008/140‑1 (MQ=255)

                       ggAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGt                                                                                                         >  2:1566325/1‑140 (MQ=255)

                        gAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTa                                                                                                        >  2:66251/1‑140 (MQ=255)

                        gAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTa                                                                                                        >  1:617473/1‑140 (MQ=255)

                        gAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTa                                                                                                        >  2:278399/1‑140 (MQ=255)

                        gAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTa                                                                                                        >  1:1392794/1‑140 (MQ=255)

                         aaGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTAc                                                                                                       <  1:1312812/140‑1 (MQ=255)

                             cTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACAttt                                                                                                   >  2:931759/1‑140 (MQ=255)

                              tACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTa                                                                                                  <  2:1427470/140‑1 (MQ=255)

                               aCCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGtt                                                                                                           <  1:1345511/130‑1 (MQ=255)

                               aCCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGtt                                                                                                           >  2:1345511/1‑130 (MQ=255)

                                  cGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACaa                                                                                              <  1:1609343/140‑1 (MQ=255)

                                   gACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACaaa                                                                                             <  1:1042320/140‑1 (MQ=255)

                                   gACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACaaa                                                                                             <  1:1207627/140‑1 (MQ=255)

                                    aCAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAGAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAAc                                                                                            <  1:1402924/140‑1 (MQ=255)

                                    aCAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAAc                                                                                            <  1:66251/140‑1 (MQ=255)

                                        aTGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGct                                                                                        >  2:441768/1‑140 (MQ=255)

                                           aaaaTCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCtt                                                                                     <  2:617473/140‑1 (MQ=255)

                                                  aGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCttt                                                                              >  2:633553/1‑140 (MQ=255)

                                                  aGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCttt                                                                              <  2:1422913/140‑1 (MQ=255)

                                                  aGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCttt                                                                              >  1:97756/1‑140 (MQ=255)

                                                   gCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTc                                                                             <  1:633553/140‑1 (MQ=255)

                                                    ccGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTcc                                                                            <  1:492588/140‑1 (MQ=255)

                                                                 gAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCgg                                                               <  2:97756/140‑1 (MQ=255)

                                                                 gAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCgg                                                               <  1:1566325/140‑1 (MQ=255)

                                                                  aaCAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTc                                                                             <  2:1001512/125‑1 (MQ=255)

                                                                  aaCAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTc                                                                             >  1:1001512/1‑125 (MQ=255)

                                                                   aCAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGcc                                                             <  1:1479951/140‑1 (MQ=255)

                                                                    cAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCaaa                                                                   >  1:781418/1‑133 (MQ=255)

                                                                    cAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCaaa                                                                   <  2:781418/133‑1 (MQ=255)

                                                                    cAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCa                                                            >  1:957415/1‑140 (MQ=255)

                                                                    cAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCa                                                            >  1:1685712/1‑140 (MQ=255)

                                                                    cAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCa                                                            >  1:18390/1‑140 (MQ=255)

                                                                       gATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCataa                                                         >  1:1173562/1‑140 (MQ=255)

                                                                        aTTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGc                                                              <  1:487661/134‑1 (MQ=255)

                                                                        aTTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGc                                                              >  2:487661/1‑134 (MQ=255)

                                                                        aTTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCataat                                                        >  1:174956/1‑140 (MQ=255)

                                                                        aTTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCataat                                                        >  1:213248/1‑140 (MQ=255)

                                                                         ttATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCataata                                                       >  2:907998/1‑140 (MQ=255)

                                                                          tATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCAtaataa                                                      >  1:1160547/1‑140 (MQ=255)

                                                                            tCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAAcc                                                    >  1:266002/1‑140 (MQ=255)

                                                                               agaAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCa                                                 <  2:174956/140‑1 (MQ=255)

                                                                               agaAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCa                                                 <  2:1532825/140‑1 (MQ=255)

                                                                               agaAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCa                                                 <  1:207601/140‑1 (MQ=255)

                                                                                 aaaGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATg                                               <  1:1685511/140‑1 (MQ=255)

                                                                                       aTCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGttttt                                         >  1:1316123/1‑140 (MQ=255)

                                                                                       aTCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGttttt                                         >  1:833103/1‑140 (MQ=255)

                                                                                          aTGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATg                                      >  2:1240169/1‑140 (MQ=255)

                                                                                          aTGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATg                                      >  1:506760/1‑140 (MQ=255)

                                                                                           tGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATgg                                     >  2:148265/1‑140 (MQ=255)

                                                                                           tGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATgg                                     >  2:1624972/1‑140 (MQ=255)

                                                                                                 cACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCttttt                               >  1:1161772/1‑140 (MQ=255)

                                                                                                  aCCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCAt                                                <  1:550569/122‑1 (MQ=255)

                                                                                                  aCCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCAt                                                >  2:550569/1‑122 (MQ=255)

                                                                                                  aCCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCtttttt                              >  1:411700/1‑140 (MQ=255)

                                                                                                     ggAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCtt                           <  2:1160547/140‑1 (MQ=255)

                                                                                                      gAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTa                                        <  2:590788/126‑1 (MQ=255)

                                                                                                      gAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTa                                        >  1:590788/1‑126 (MQ=255)

                                                                                                      gAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTa                          <  1:1658400/140‑1 (MQ=255)

                                                                                                      gAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTa                          >  2:1658400/1‑140 (MQ=255)

                                                                                                      gAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTa                          <  2:506760/140‑1 (MQ=255)

                                                                                                         cAGTACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAgg                       >  1:869074/1‑140 (MQ=255)

                                                                                                            tACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGttt                    >  1:1017221/1‑140 (MQ=255)

                                                                                                            tACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGttt                    >  1:1261601/1‑140 (MQ=255)

                                                                                                            tACCTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGttt                    >  2:400751/1‑140 (MQ=255)

                                                                                                              ccTCTGGATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGttttt                  >  2:980324/1‑140 (MQ=255)

                                                                                                                   ggATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCtt             <  1:1663891/140‑1 (MQ=255)

                                                                                                                    gATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTc            <  1:251216/140‑1 (MQ=255)

                                                                                                                    gATCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTc            >  1:1525328/1‑140 (MQ=255)

                                                                                                                     aTCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCg           <  2:1525328/140‑1 (MQ=255)

                                                                                                                      tCCACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGc          <  1:50785/140‑1 (MQ=255)

                                                                                                                        cACCGTCGCTTTAAAACTCGCCCGGTGGGATAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTg        >  2:576266/1‑140 (MQ=255)

                                                                                                                        cACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTg        <  1:1352535/140‑1 (MQ=255)

                                                                                                                        cACCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTg        <  1:1240169/140‑1 (MQ=255)

                                                                                                                         aCCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACATACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGa       >  1:1165374/1‑140 (MQ=255)

                                                                                                                         aCCGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGa       <  2:869074/140‑1 (MQ=255)

                                                                                                                          ccGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGaa      <  2:266002/140‑1 (MQ=255)

                                                                                                                           cGTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAat     <  2:957415/140‑1 (MQ=255)

                                                                                                                            gTCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAata    >  2:573189/1‑140 (MQ=255)

                                                                                                                             tCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAatat   <  2:1392794/140‑1 (MQ=255)

                                                                                                                             tCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAatat   <  1:1624972/140‑1 (MQ=255)

                                                                                                                             tCGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAatat   <  2:213248/140‑1 (MQ=255)

                                                                                                                              cGCTTTAAAACTCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGGCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATc  >  2:578636/1‑140 (MQ=255)

CGTTTGTTCATCACCCCAGAGATGGAAGGCTACCCGACAGATGAAAATCAAGCCGCTGCCTATATGAACAAGATTATCGAGAAAGAGATCATGCGCGCACCGGAGCAGTACCTCTGGATCCACCGTCGCTTTAAAACGCGCCCGGTGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATC  >  NC_000913/2496395‑2496660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A