Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F30 I1 R1 23 42.7 1455564 99.2% 1443919 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,846,748 G→T G140G (GGC→GGA)  uhpT ← hexose‑6‑phosphate:phosphate antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,846,7480GT100.0% 206.3 / NA 59G140G (GGC→GGA) uhpThexose‑6‑phosphate:phosphate antiporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (27/32);  total (27/32)

GGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTT  >  NC_000913/3846612‑3846884
                                                                                                                                        |                                                                                                                                        
ggTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAAcctccg                                                                                                                                       >  2:507027/1‑140 (MQ=255)
      ttGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTActc                                                                                                                                 <  2:671944/140‑1 (MQ=255)
      ttGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTActc                                                                                                                                 >  1:172596/1‑140 (MQ=255)
              aaCAGCGCCACACCTGCTGCGCCTGTACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGaaaaa                                                                                                                         <  2:646828/140‑1 (MQ=255)
              aaCAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGaaaaa                                                                                                                         >  1:660055/1‑140 (MQ=255)
               aCAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAANCTCNGGTACTCNGGAAAAAg                                                                                                                        <  1:487251/140‑1 (MQ=255)
                cAGCGCCACCCCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGATAAAGc                                                                                                                       <  2:545905/140‑1 (MQ=255)
                   cgcCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGc                                                                                                                    >  2:254613/1‑140 (MQ=255)
                    gcCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCt                                                                                                                   <  2:507864/140‑1 (MQ=255)
                             gctgcGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCt                                                                                                                   >  2:306791/1‑131 (MQ=255)
                             gctgcGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCt                                                                                                                   <  1:306791/131‑1 (MQ=255)
                                   ccTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGc                                                                                                    >  2:111620/1‑140 (MQ=255)
                                    cTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCa                                                                                                   >  1:534459/1‑140 (MQ=255)
                                     tGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCaa                                                                                                  <  1:254613/140‑1 (MQ=255)
                                     tGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCaa                                                                                                  <  2:534459/140‑1 (MQ=255)
                                     tGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCaa                                                                                                  <  1:549586/140‑1 (MQ=255)
                                                  ttGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAg                                                                                     <  2:172596/140‑1 (MQ=255)
                                                    gtgAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGc                                                                                   >  2:8636/1‑140 (MQ=255)
                                                    gtgAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGc                                                                                   >  2:260636/1‑140 (MQ=255)
                                                          aaTATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCg                                                                             <  2:151047/140‑1 (MQ=255)
                                                               tCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCg                                                                        <  1:8636/140‑1 (MQ=255)
                                                               tCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCg                                                                        <  1:507027/140‑1 (MQ=255)
                                                                ccAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTTATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGc                                                                       >  1:369464/1‑140 (MQ=255)
                                                                ccAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGc                                                                       <  2:622893/140‑1 (MQ=255)
                                                                    aaaCCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGcc                                                                   <  2:704677/140‑1 (MQ=255)
                                                                        cGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGcc                                                                         >  1:194902/1‑130 (MQ=255)
                                                                        cGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGcc                                                                         <  2:194902/130‑1 (MQ=255)
                                                                          aGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCg                                                                        >  2:398241/1‑129 (MQ=255)
                                                                          aGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCg                                                                        <  1:398241/129‑1 (MQ=255)
                                                                          aGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACt                                                             >  1:461204/1‑140 (MQ=255)
                                                                                      cgTTTACGACGCGGCGTCCATTTGGTTATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGcc                                                 <  2:369464/140‑1 (MQ=255)
                                                                                      cgTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGcc                                                 <  1:111620/140‑1 (MQ=255)
                                                                                      cgTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGcc                                                 <  2:329092/140‑1 (MQ=255)
                                                                                       gTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATAc                                                              <  2:598456/126‑1 (MQ=255)
                                                                                       gTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATAc                                                              >  1:598456/1‑126 (MQ=255)
                                                                                       gTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGccc                                                <  1:235481/140‑1 (MQ=255)
                                                                                         ttACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAg                                              >  1:112677/1‑140 (MQ=255)
                                                                                          tACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGc                                             >  2:490471/1‑140 (MQ=255)
                                                                                               cgcgGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACa                                        <  1:260636/140‑1 (MQ=255)
                                                                                                 cggcgTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACaaa                                      >  1:450102/1‑140 (MQ=255)
                                                                                                 cggcgTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACaaa                                      <  1:490471/140‑1 (MQ=255)
                                                                                                   gcgTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAg                                                   >  2:251787/1‑125 (MQ=255)
                                                                                                   gcgTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAg                                                   <  1:251787/125‑1 (MQ=255)
                                                                                                    cgTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAg                                   <  2:660055/140‑1 (MQ=255)
                                                                                                    cgTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAg                                   <  2:450102/140‑1 (MQ=255)
                                                                                                    cgTCCATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAg                                   <  2:112677/140‑1 (MQ=255)
                                                                                                        gacagggTGATGGTGGAGTAAATGCCCGACCCTGCGGTAGTCGAGAAAAAGCCGATTAAGGCGTAGAAGGCAATCAGCGGGAACAGGATAACCGAGCCGCTGACCATACTGGCACTGAAGCCCAGCATACAAATAGCaga                               <  2:43938/135‑1 (MQ=255)
                                                                                                        cATTTGGTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCaga                               <  2:286299/140‑1 (MQ=255)
                                                                                                              gTGATGGTGGAGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGAt                         >  2:635590/1‑140 (MQ=255)
                                                                                                                        aGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCactgtc               >  1:43938/1‑135 (MQ=255)
                                                                                                                        aGTAACTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAAc               <  2:461204/140‑1 (MQ=255)
                                                                                                                             cTGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAg          >  2:384993/1‑140 (MQ=255)
                                                                                                                              tGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAgg         >  2:408407/1‑140 (MQ=255)
                                                                                                                              tGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAgg         >  2:512589/1‑140 (MQ=255)
                                                                                                                              tGCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAgg         >  2:357278/1‑140 (MQ=255)
                                                                                                                               gCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCa                    <  2:477796/128‑1 (MQ=255)
                                                                                                                               gCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCa                    >  1:477796/1‑128 (MQ=255)
                                                                                                                               gCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGa        >  2:665608/1‑140 (MQ=255)
                                                                                                                               gCACGAACCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGa        >  2:283602/1‑140 (MQ=255)
                                                                                                                                    aaCCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGt   >  1:575835/1‑140 (MQ=255)
                                                                                                                                     aCCTCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGtt  <  2:575835/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
GGTAATTTGCCCCGAACAGCGCCACACCTGCTGCGCCTGCACCGCCAAGGTTGTGAGAAATATTCCAGAAACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTT  >  NC_000913/3846612‑3846884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A