Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A40 F30 I1 R1 29 105.3 3544336 99.4% 3523069 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,566,757 C→A D164Y (GAT→TAT)  yjiN ← DUF445 domain‑containing protein YjiN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,566,7570CA100.0% 281.3 / NA 79D164Y (GAT→TAT) yjiNDUF445 domain‑containing protein YjiN
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (42/37);  total (42/37)

TGCTGGGCGATAAACTTGCGCGATTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATCGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCGGCGGGCGTTTTCTGGCTGGCTA  >  NC_000913/4566621‑4566890
                                                                                                                                        |                                                                                                                                     
tGCTGGGCGATAAACTTGCGCGATTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGAc                                                                                                                                    >  1:541137/1‑140 (MQ=255)
tGCTGGGCGATAAACTTGCGCGATTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGAc                                                                                                                                    <  1:1034940/140‑1 (MQ=255)
      gCGATAAACTTGCGCGATTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATc                                                                                                                              >  2:1239722/1‑140 (MQ=255)
       cGATAAACTTGCGCGATTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCa                                                                                                                             >  2:1619917/1‑140 (MQ=255)
          tAAACTTGCGCGATTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATc                                                                                                                          <  1:1647153/140‑1 (MQ=255)
                      aTTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGAcc                                                                                                              >  1:770889/1‑140 (MQ=255)
                      aTTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAAT‑GCCCGATGGACcg                                                                                                             <  2:349651/140‑1 (MQ=255)
                       tttATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACcg                                                                                                             <  1:1613188/140‑1 (MQ=255)
                       tttATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACcg                                                                                                             <  2:770889/140‑1 (MQ=255)
                                 tGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAg                                                                                                   >  2:1650180/1‑140 (MQ=255)
                                   gagaAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCa                                                                                                 <  1:529001/140‑1 (MQ=255)
                                         ggCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCt                                                                                           >  1:517842/1‑140 (MQ=255)
                                         ggCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCt                                                                                           <  1:1566266/140‑1 (MQ=255)
                                             aTCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAg                                                                                                <  2:335127/131‑1 (MQ=255)
                                             aTCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAg                                                                                                >  1:335127/1‑131 (MQ=255)
                                             aTCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGgcg                                                                                             >  1:1155214/1‑134 (MQ=255)
                                             aTCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGgcg                                                                                             <  2:1155214/134‑1 (MQ=255)
                                             aTCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAAt                                                                                       >  2:1028546/1‑140 (MQ=255)
                                             aTCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAAt                                                                                       >  1:1646742/1‑140 (MQ=255)
                                             aTCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAAt                                                                                       >  2:544487/1‑140 (MQ=255)
                                                  cTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATAcgcg                                                                                  <  2:357737/140‑1 (MQ=255)
                                                    gtgCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGca                                                                                <  1:1619917/140‑1 (MQ=255)
                                                     tgCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGcat                                                                               >  1:1742555/1‑140 (MQ=255)
                                                      gCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGcatc                                                                              <  2:1316708/140‑1 (MQ=255)
                                                      gCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGcatc                                                                              <  1:1012205/140‑1 (MQ=255)
                                                       cGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGcatca                                                                             >  1:1521677/1‑140 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGaa                                                                                        >  1:1771596/1‑124 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGaa                                                                                        <  2:1771596/124‑1 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGt                                                                        <  1:1028546/140‑1 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGt                                                                        <  2:1521677/140‑1 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGt                                                                        >  2:1446853/1‑140 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGt                                                                        >  2:270860/1‑140 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGt                                                                        <  1:544487/140‑1 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGt                                                                        <  2:517842/140‑1 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGt                                                                        <  1:1650180/140‑1 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGt                                                                        >  1:284393/1‑140 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCCGAATACGCGca                                                                                >  1:1469376/1‑132 (MQ=255)
                                                            aGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCCGAATACGCGca                                                                                <  2:1469376/132‑1 (MQ=255)
                                                               gTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAg                                                                     <  1:1126404/140‑1 (MQ=255)
                                                               gTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAg                                                                     >  2:1126404/1‑140 (MQ=255)
                                                               gTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAg                                                                     >  2:713382/1‑140 (MQ=255)
                                                                      gcagcaCCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCgaga                                                              <  1:1239722/140‑1 (MQ=255)
                                                                      gcagcaCCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCgaga                                                              >  2:116634/1‑140 (MQ=255)
                                                                        agcaCCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGaaa                                                            <  1:27610/140‑1 (MQ=255)
                                                                         gcaCCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGaaaa                                                           <  1:270860/140‑1 (MQ=255)
                                                                          caCCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAAc                                                          >  2:1233929/1‑140 (MQ=255)
                                                                            ccTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCg                                                        >  2:711008/1‑140 (MQ=255)
                                                                            ccTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCg                                                        >  1:335292/1‑140 (MQ=255)
                                                                                atgaCGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCa                                                    <  1:1446853/140‑1 (MQ=255)
                                                                                 tgaCGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCAt                                                   >  1:859571/1‑140 (MQ=255)
                                                                                 tgaCGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCAt                                                   >  1:727905/1‑140 (MQ=255)
                                                                                  gaCGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATg                                                  <  2:284393/140‑1 (MQ=255)
                                                                                  gaCGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATg                                                  <  2:412090/140‑1 (MQ=255)
                                                                                      aTCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCt                                              <  1:46301/140‑1 (MQ=255)
                                                                                       tCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTg                                             >  2:973638/1‑140 (MQ=255)
                                                                                       tCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTg                                             <  2:642079/140‑1 (MQ=255)
                                                                                       tCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTg                                             >  1:849058/1‑140 (MQ=255)
                                                                                          tttttGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCaa                                          >  2:1662620/1‑140 (MQ=255)
                                                                                           ttttGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAAc                                         <  1:1662620/140‑1 (MQ=255)
                                                                                           ttttGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAAc                                         <  1:711008/140‑1 (MQ=255)
                                                                                            tttGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACa                                        >  1:684186/1‑140 (MQ=255)
                                                                                              tGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGa                                      >  2:1296687/1‑140 (MQ=255)
                                                                                                     aCTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGAc                               >  1:995926/1‑140 (MQ=255)
                                                                                                     aCTCTCCAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGAc                               >  2:113940/1‑140 (MQ=255)
                                                                                                           cAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAAcgc                         >  1:1547909/1‑140 (MQ=255)
                                                                                                           cAGCATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAAcgc                         >  2:1070410/1‑140 (MQ=255)
                                                                                                              cATCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACgcggc                      >  1:468466/1‑140 (MQ=255)
                                                                                                                tCAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGcggcgg                    >  2:1770432/1‑140 (MQ=255)
                                                                                                                 cAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCggcggg                   <  1:113940/140‑1 (MQ=255)
                                                                                                                 cAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCggcggg                   <  1:1770432/140‑1 (MQ=255)
                                                                                                                 cAACGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCggcggg                   <  1:148361/140‑1 (MQ=255)
                                                                                                                   aCGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCggcgggcg                 >  2:505141/1‑140 (MQ=255)
                                                                                                                   aCGCACTGGTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCggcgggcg                 >  1:731276/1‑140 (MQ=255)
                                                                                                                           gTGCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCGGCGGGCGTTTTctgg         >  1:1091989/1‑140 (MQ=255)
                                                                                                                             gCCGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCGGCGGGCGTTTTctggct       <  2:468466/140‑1 (MQ=255)
                                                                                                                              ccGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCGGCGGGCGTTTTctggctg      >  2:1031365/1‑140 (MQ=255)
                                                                                                                              ccGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCGGCGGGCGTTTTctggctg      <  2:859571/140‑1 (MQ=255)
                                                                                                                              ccGGAAAGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCGGCGGGCGTTTTctggctg      >  1:1556728/1‑140 (MQ=255)
                                                                                                                                  aaaGATAGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCGGCGGGCGTTTTCTGGCTGGCTa  <  2:849058/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
TGCTGGGCGATAAACTTGCGCGATTTATCGCGCTGGAGAAGGGCGATCAACTGTGCGATCAGCGTATCCAGCAGCACCTGATGACGATCGTTTTTGGTCATACTCTCCAGCATCAACGCACTGGTGCCGGAAAGATCGACCTTATCAATCGCCCGATGGACCGCGCGCTTAAGCAGGCGCTGAATACGCGCATCATCGGTAAGTTCGAGAAAACCGCTCATGATCTGCAACAGATGCTGACCAACGCGGCGGGCGTTTTCTGGCTGGCTA  >  NC_000913/4566621‑4566890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A