Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A38 F60 I1 R1 17 92.6 3121444 99.1% 3093351 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,554,703 T→G L43R (CTT→CGT)  uxuR → DNA‑binding transcriptional repressor UxuR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,554,7030TG100.0% 417.6 / NA 106L43R (CTT→CGT) uxuRDNA‑binding transcriptional repressor UxuR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (52/54);  total (52/54)

Only 100 of 106 total aligned reads displayed.

ACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAA  >  NC_000913/4554566‑4554838
                                                                                                                                         |                                                                                                                                       
acacAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTg                                                                                                                                       >  2:286618/1‑140 (MQ=255)
 cacaACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGa                                                                                                                                      >  1:260942/1‑140 (MQ=255)
   caacaCCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATg                                                                                                                                    >  1:1391744/1‑140 (MQ=255)
   caacaCCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATg                                                                                                                                    >  2:106522/1‑140 (MQ=255)
    aacaCCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGt                                                                                                                                   <  1:1234105/140‑1 (MQ=255)
      cacCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCa                                                                                                                                 >  1:105566/1‑140 (MQ=255)
        ccATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCAcg                                                                                                                               <  2:700099/140‑1 (MQ=255)
          aTGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCAcgcg                                                                                                                             >  2:1324760/1‑140 (MQ=255)
          aTGAAATCTGCCACCTCTGCGCAAAGACCTTA‑CAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCgg                                                                                                                            <  1:1080557/140‑1 (MQ=255)
           tGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCgg                                                                                                                            >  2:773130/1‑140 (MQ=255)
           tGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCgg                                                                                                                            <  1:1280750/140‑1 (MQ=255)
           tGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCgg                                                                                                                            >  1:264768/1‑140 (MQ=255)
           tGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCgg                                                                                                                            <  2:18068/140‑1 (MQ=255)
            gAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGa                                                                                                                           >  1:81561/1‑140 (MQ=255)
            gAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGa                                                                                                                           <  2:105566/140‑1 (MQ=255)
            gAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGa                                                                                                                           <  2:81561/140‑1 (MQ=255)
            gAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGa                                                                                                                           >  2:1247874/1‑140 (MQ=255)
              aaTCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACg                                                                                                                         <  1:1247874/140‑1 (MQ=255)
              aaTCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACg                                                                                                                         >  2:574924/1‑140 (MQ=255)
              aaTCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACg                                                                                                                         <  1:773130/140‑1 (MQ=255)
                tCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACggt                                                                                                                       <  1:1217070/140‑1 (MQ=255)
                  tGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACggtgg                                                                                                                     >  1:1505764/1‑140 (MQ=255)
                   gCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACggtggt                                                                                                                    >  2:972779/1‑140 (MQ=255)
                      aCCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGTTCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACg                                                                                                                 >  1:735141/1‑140 (MQ=255)
                        ctctGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTg                                                                                                               <  2:264768/140‑1 (MQ=255)
                          ctGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGaa                                                                                                             >  2:255107/1‑140 (MQ=255)
                             cgcAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAgcg                                                                                                          >  2:329297/1‑140 (MQ=255)
                             cgcAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAgcg                                                                                                          <  2:840351/140‑1 (MQ=255)
                              gcAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAgcgc                                                                                                         >  2:1321532/1‑140 (MQ=255)
                                  aGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGAt                                                                                                     >  2:1127656/1‑140 (MQ=255)
                                   gACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATc                                                                                                    <  1:286618/140‑1 (MQ=255)
                                        tACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCt                                                                                               >  2:1340892/1‑140 (MQ=255)
                                        tACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCt                                                                                               <  2:322605/140‑1 (MQ=255)
                                          ccAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAgc                                                                                                           <  2:1192592/126‑1 (MQ=255)
                                          ccAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAgc                                                                                                           >  1:1192592/1‑126 (MQ=255)
                                           cAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGga                                                                                            <  1:106522/140‑1 (MQ=255)
                                              gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCTAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                                                         >  1:438245/1‑140 (MQ=255)
                                              gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                                                         >  2:1422105/1‑140 (MQ=255)
                                              gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                                                         >  1:1167671/1‑140 (MQ=255)
                                              gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                                                         >  1:978684/1‑140 (MQ=255)
                                                aGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCa                                                                                       <  1:1422105/140‑1 (MQ=255)
                                                  tCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCaaa                                                                                     <  1:1321532/140‑1 (MQ=255)
                                                   cGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAg                                                                                    >  1:1189190/1‑140 (MQ=255)
                                                    ggggCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAgg                                                                                   >  1:416797/1‑140 (MQ=255)
                                                     gggCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAggg                                                                                  >  1:276109/1‑140 (MQ=255)
                                                     gggCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAggg                                                                                  <  2:1189190/140‑1 (MQ=255)
                                                         gatgatCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtgg                                                                              <  1:320566/140‑1 (MQ=255)
                                                          atgatCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCTAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtggt                                                                             <  2:438245/140‑1 (MQ=255)
                                                          atgatCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtggt                                                                             <  2:966510/140‑1 (MQ=255)
                                                           tgatCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtggtg                                                                            >  1:1267504/1‑140 (MQ=255)
                                                            gatCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtggtgg                                                                           >  2:453358/1‑140 (MQ=255)
                                                            gatCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtggtgg                                                                           >  2:393936/1‑140 (MQ=255)
                                                            gatCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtggtgg                                                                           >  2:1274695/1‑140 (MQ=255)
                                                                    aTCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGc                                                                   <  2:1391744/140‑1 (MQ=255)
                                                                       tGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCgg                                                                >  1:991449/1‑140 (MQ=255)
                                                                        gATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCggg                                                               <  1:574924/140‑1 (MQ=255)
                                                                         aTCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCgggg                                                              >  2:255857/1‑140 (MQ=255)
                                                                         aTCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCgggg                                                              >  2:432349/1‑140 (MQ=255)
                                                                         aTCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCggg                                                               >  1:640528/1‑139 (MQ=255)
                                                                          tCATAAAGACGCCGTACAATCCTGGCGACCGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCACGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGt                                                             <  1:258930/140‑1 (MQ=255)
                                                                            aTAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                                           <  2:276109/140‑1 (MQ=255)
                                                                            aTAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                                           <  2:677107/140‑1 (MQ=255)
                                                                             tAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGcc                                                          <  1:1274695/140‑1 (MQ=255)
                                                                               aaGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCgg                                                        >  1:1276566/1‑140 (MQ=255)
                                                                                   cGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                                                    >  1:865622/1‑140 (MQ=255)
                                                                                   cGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                                                    >  1:869646/1‑140 (MQ=255)
                                                                                   cGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                                                    >  1:1512695/1‑140 (MQ=255)
                                                                                   cGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                                                    >  2:687612/1‑140 (MQ=255)
                                                                                   cGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                                                    >  2:798204/1‑140 (MQ=255)
                                                                                    gCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCt                                                   <  2:978684/140‑1 (MQ=255)
                                                                                    gCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCt                                                   <  1:1340892/140‑1 (MQ=255)
                                                                                    gCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCt                                                   <  1:393936/140‑1 (MQ=255)
                                                                                     ccGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTa                                                  >  2:1111320/1‑140 (MQ=255)
                                                                                      cGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTAt                                                 <  2:869646/140‑1 (MQ=255)
                                                                                      cGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTAt                                                 >  2:1479759/1‑140 (MQ=255)
                                                                                       gTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATg                                                <  1:1147533/140‑1 (MQ=255)
                                                                                        tACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                                           <  1:662447/128‑1 (MQ=255)
                                                                                        tACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                                           >  2:662447/1‑128 (MQ=255)
                                                                                        tACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGt                                               >  1:1078076/1‑140 (MQ=255)
                                                                                        tACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGt                                               >  2:455830/1‑140 (MQ=255)
                                                                                         aCAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGtt                                              <  2:865622/140‑1 (MQ=255)
                                                                                            aTCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCtt                                           <  2:1276566/140‑1 (MQ=255)
                                                                                             tCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTg                                          >  1:712867/1‑140 (MQ=255)
                                                                                                tGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATa                                       >  1:952337/1‑140 (MQ=255)
                                                                                                            gccgccGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGcc                           <  1:972779/140‑1 (MQ=255)
                                                                                                            gccgccGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGcc                           <  1:1074979/140‑1 (MQ=255)
                                                                                                            gccgccGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGcc                           <  1:798204/140‑1 (MQ=255)
                                                                                                            gccgccGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGcc                           <  2:735141/140‑1 (MQ=255)
                                                                                                            gccgccGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGcc                           <  2:712867/140‑1 (MQ=255)
                                                                                                            gccgccGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGcc                           <  2:416797/140‑1 (MQ=255)
                                                                                                            gccgccGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGcc                           <  1:255857/140‑1 (MQ=255)
                                                                                                            gccgccGGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGcc                           <  2:307996/140‑1 (MQ=255)
                                                                                                             ccgccgGAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCa                          <  1:255107/140‑1 (MQ=255)
                                                                                                                   gAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAacac                    <  2:1167671/140‑1 (MQ=255)
                                                                                                                   gAGCGTGAAATTGCAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAacac                    >  2:1535110/1‑140 (MQ=255)
                                                                                                                                cAGAAATGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGAt       >  2:890513/1‑140 (MQ=255)
                                                                                                                                   aaaTGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGcc    <  1:836929/140‑1 (MQ=255)
                                                                                                                                   aaaTGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGcc    <  1:687612/140‑1 (MQ=255)
                                                                                                                                   aaaTGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGcc    <  2:1505764/140‑1 (MQ=255)
                                                                                                                                     aTGCGTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCaa  >  1:1342717/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
ACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAA  >  NC_000913/4554566‑4554838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A