Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A31 F60 I1 R1
|
22 |
55.2 |
1900332 |
99.2% |
1885129 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,851,687 |
A→T |
D366E (GAT→GAA) |
ilvB ← |
acetohydroxy acid synthase I subunit IlvB |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,851,687 | 0 | A | T | 100.0%
| 216.4
/ NA
| 62 | D366E (GAT→GAA) | ilvB | acetohydroxy acid synthase I subunit IlvB |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (39/23); total (39/23) |
GTCAGCCACTGGCGTGGGCGATTGAGCGGATAAGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGATCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACATCCGCCTGAATC > NC_000913/3851550‑3851819
|
gTCAGCCACTGGCGTGGGCGATTGAGCGGATAAGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTc > 2:35971/1‑140 (MQ=255)
aGCCACTGGCGTGGGCGATTGAGCGGATAAGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCa < 1:411096/140‑1 (MQ=255)
aGCCACTGGCGTGGGCGATTGAGCGGATAAGCTTGCGCGGTCCACATCTGATACTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCa < 1:46697/140‑1 (MQ=255)
cTGGCGTGGGCGATTGAGCGGATAAGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCtt > 1:806376/1‑140 (MQ=255)
gTGGGCGATTGAGCGGATAAGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCggg > 2:39316/1‑140 (MQ=255)
ttGAGCGGATAAGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGaca > 1:833142/1‑140 (MQ=255)
cGGATAAGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGaa > 2:79364/1‑140 (MQ=255)
aGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCAc < 1:627698/140‑1 (MQ=255)
aGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCAc < 2:711456/140‑1 (MQ=255)
tGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTg > 2:434137/1‑140 (MQ=255)
gcgcGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGa > 1:610186/1‑122 (MQ=255)
gcgcGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGa < 2:610186/122‑1 (MQ=255)
cgcgGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCa > 1:679069/1‑140 (MQ=255)
aTGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACt > 1:550763/1‑140 (MQ=255)
aTGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACt > 1:851240/1‑140 (MQ=255)
tGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTg > 2:52838/1‑140 (MQ=255)
gACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAAc < 2:130420/134‑1 (MQ=255)
gACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAAc > 1:130420/1‑134 (MQ=255)
gACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGc > 2:450220/1‑140 (MQ=255)
gACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGc < 2:851240/140‑1 (MQ=255)
gACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGc > 2:921042/1‑140 (MQ=255)
gACCAACGTCGGTGGTGATAATTGCATTGTAATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTa < 2:30687/129‑1 (MQ=255)
gACCAACGTCGGTGGTGATAATTGCATTGTAATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTa > 1:30687/1‑129 (MQ=255)
ccAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCa < 1:79364/140‑1 (MQ=255)
cGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCa < 2:894411/126‑1 (MQ=255)
cGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCa > 1:894411/1‑126 (MQ=255)
cGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCActct > 2:855739/1‑140 (MQ=255)
gtggtgATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCAcg > 1:153036/1‑140 (MQ=255)
aaTTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTgcg > 1:733203/1‑140 (MQ=255)
tGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCtt > 1:460370/1‑140 (MQ=255)
cATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTcc > 1:638337/1‑140 (MQ=255)
aTTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTcca > 1:691671/1‑140 (MQ=255)
gTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTccacca < 2:153036/140‑1 (MQ=255)
gTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTccacca < 1:660330/140‑1 (MQ=255)
tCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTccacca > 1:867382/1‑136 (MQ=255)
tCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTccacca < 2:867382/136‑1 (MQ=255)
caGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCaa < 2:733203/140‑1 (MQ=255)
aGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAAc < 1:81031/140‑1 (MQ=255)
aGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAAc > 2:203958/1‑140 (MQ=255)
aGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAAc > 2:170964/1‑140 (MQ=255)
aGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAAc > 2:81031/1‑140 (MQ=255)
gcggcAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAg > 2:453824/1‑128 (MQ=255)
gcggcAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAg < 1:453824/128‑1 (MQ=255)
gcggcAACGGCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTg > 2:518933/1‑140 (MQ=255)
gCGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCAc < 2:638337/140‑1 (MQ=255)
cGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACg > 1:7693/1‑140 (MQ=255)
cGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACg < 2:691671/140‑1 (MQ=255)
cGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACg > 2:541057/1‑140 (MQ=255)
cGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACg > 2:171765/1‑140 (MQ=255)
cGTTGATCAGGCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACg > 2:357964/1‑140 (MQ=255)
ggCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACa < 1:52838/140‑1 (MQ=255)
ggCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACa < 2:7693/140‑1 (MQ=255)
gCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCa > 1:384153/1‑128 (MQ=255)
gCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCa < 2:384153/128‑1 (MQ=255)
gCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACAt < 1:35971/140‑1 (MQ=255)
gCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACAt > 2:478118/1‑140 (MQ=255)
gCCGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCACTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACAt > 2:568455/1‑140 (MQ=255)
cGTAATGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACATcc < 2:137931/140‑1 (MQ=255)
aaTGGCTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACATCCGcc > 2:499373/1‑140 (MQ=255)
cTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACATCCGCCTGAAt > 1:425248/1‑140 (MQ=255)
cTTAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACATCCGCCTGAAt > 1:814566/1‑140 (MQ=255)
ttAACGGTTCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCTGGATCAACTGCGCCAGCACGTCATCAACATCCGCCTGAATc > 1:58589/1‑140 (MQ=255)
|
GTCAGCCACTGGCGTGGGCGATTGAGCGGATAAGCTTGCGCGGTCCACATCTGATGCTGACCAACGTCGGTGGTGATAATTGCATTGTCATCGACACAGGCGGCAACGGCGTTGATCAGGCCGTAATGGCTTAACGGATCGCACGCTTTCGGGATTGGACACGGAAACTCACGCTGCAAATCCGCTACCAACTGGTGCCACTCTGCACGCGGTTGCGCTTCCACCAGCGGGATCAACTGCGCCAGCACGTCATCAACATCCGCCTGAATC > NC_000913/3851550‑3851819
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A