Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A42 F60 I1 R1
|
18 |
77.5 |
2606276 |
98.8% |
2575000 |
139.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,638,068 |
Δ16 bp |
coding (1373‑1388/1425 nt) |
creC → |
sensory histidine kinase CreC |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4638068 |
4638083 |
16 |
76 [0] |
[0] 80 |
creC |
sensory histidine kinase CreC |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4638067 | 0 (0.000) | 75 (0.980) |
53/276 |
0.2 |
100% |
coding (1372/1425 nt) |
creC |
sensory histidine kinase CreC |
| ? | NC_000913 |
4638084 = |
0 (0.000) | coding (1389/1425 nt) |
creC |
sensory histidine kinase CreC |
GATK/CNVnator alignment
N/A
