Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A39 F60 I1 R1 27 74.7 2598802 99.1% 2575412 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,233,447 T→G intergenic (‑214/‑311) lysC ← / → pgi aspartate kinase III/glucose‑6‑phosphate isomerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,233,4470TG100.0% 324.1 / NA 82intergenic (‑214/‑311)lysC/pgiaspartate kinase III/glucose‑6‑phosphate isomerase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (32/50);  total (32/50)

TTCGCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATGG  >  NC_000913/4233312‑4233580
                                                                                                                                       |                                                                                                                                     
ttCGCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCAc                                                                                                                                   <  1:568981/140‑1 (MQ=255)
ttCGCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCAc                                                                                                                                   <  1:551047/140‑1 (MQ=255)
  cGCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCAccc                                                                                                                                 >  2:279522/1‑140 (MQ=255)
  cGCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCAccc                                                                                                                                 >  2:1222318/1‑140 (MQ=255)
       ctaTTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCa                                                                                                                            <  2:443338/140‑1 (MQ=255)
       ctaTTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCa                                                                                                                            <  1:1222318/140‑1 (MQ=255)
       ctaTTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCa                                                                                                                            >  1:350008/1‑140 (MQ=255)
        taTTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAg                                                                                                                           <  1:889830/140‑1 (MQ=255)
          ttttCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGgt                                                                                                                         <  2:74626/140‑1 (MQ=255)
          ttttCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGgt                                                                                                                         <  1:734724/140‑1 (MQ=255)
            ttCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCTATCACCTCGGCGAGGCACCCCCTCAGgtgt                                                                                                                       >  1:502762/1‑140 (MQ=255)
            ttCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGgtgt                                                                                                                       <  1:778710/140‑1 (MQ=255)
                    gAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGgt                                                                                                                         >  1:812401/1‑130 (MQ=255)
                    gAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGgt                                                                                                                         <  2:812401/130‑1 (MQ=255)
                    gAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAg                                                                                                               >  2:959174/1‑140 (MQ=255)
                      aGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGa                                                                                                             <  1:941936/140‑1 (MQ=255)
                           tCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGc                                                                                                        <  1:959174/140‑1 (MQ=255)
                           tCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGc                                                                                                        <  1:1140152/140‑1 (MQ=255)
                             caccacTTGCGAAACGCCTGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGctc                                                                                                      <  2:294907/140‑1 (MQ=255)
                             caccacTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGctc                                                                                                      >  2:507409/1‑140 (MQ=255)
                               ccacTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGctcct                                                                                                    >  2:1191164/1‑140 (MQ=255)
                               ccacTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGctcct                                                                                                    >  1:147/1‑140 (MQ=255)
                                 acTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCtcctcc                                                                                                  <  1:852970/140‑1 (MQ=255)
                                  cTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGc                                                                                                        >  2:1190019/1‑133 (MQ=255)
                                  cTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGc                                                                                                        <  1:1190019/133‑1 (MQ=255)
                                  cTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCa                                                                                                 >  1:658923/1‑140 (MQ=255)
                                   ttGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCACTCAGGTGTTATCACAGGACTGGCTCCTCCaa                                                                                                <  2:54042/140‑1 (MQ=255)
                                    tGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCtcctcc                                                                                                  >  2:883660/1‑137 (MQ=255)
                                    tGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCtcctcc                                                                                                  <  1:883660/137‑1 (MQ=255)
                                      cGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAacac                                                                                             >  1:1121389/1‑140 (MQ=255)
                                       gAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACAcc                                                                                            >  1:928119/1‑140 (MQ=255)
                                         aaCGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGt                                                                                          <  2:931845/140‑1 (MQ=255)
                                          aCGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGtt                                                                                         >  1:78031/1‑140 (MQ=255)
                                             cccGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGc                                                                                                        <  1:1042809/122‑1 (MQ=255)
                                             cccGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGc                                                                                                        >  2:1042809/1‑122 (MQ=255)
                                             cccGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACt                                                                                      >  2:1145761/1‑140 (MQ=255)
                                             cccGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACt                                                                                      >  1:991972/1‑140 (MQ=255)
                                              ccGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACtt                                                                                     <  2:928119/140‑1 (MQ=255)
                                               cGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTg                                                                                    <  1:701571/140‑1 (MQ=255)
                                                    gCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCaa                                                                               <  2:658923/140‑1 (MQ=255)
                                                         cGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCTATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACgcgc                                                                          <  2:502762/140‑1 (MQ=255)
                                                         cGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACgcgc                                                                          <  2:60680/140‑1 (MQ=255)
                                                         cGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACgcgc                                                                          <  2:731657/140‑1 (MQ=255)
                                                                   gACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGc                                                                <  2:1085450/140‑1 (MQ=255)
                                                                   gACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGc                                                                <  2:70750/140‑1 (MQ=255)
                                                                    aCAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTgggc                                                               <  1:660925/140‑3 (MQ=255)
                                                                    aCAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGcc                                                               >  1:529699/1‑140 (MQ=255)
                                                                      aaCCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTg                                                             >  1:295335/1‑140 (MQ=255)
                                                                        cccAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTgcg                                                           <  2:295335/140‑1 (MQ=255)
                                                                        cccAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTgcg                                                           <  2:529699/140‑1 (MQ=255)
                                                                        cccAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTgcg                                                           <  2:78031/140‑1 (MQ=255)
                                                                        cccAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTgcg                                                           <  2:609355/140‑1 (MQ=255)
                                                                        cccAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTgcg                                                           <  1:1191164/140‑1 (MQ=255)
                                                                        cccAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTgcg                                                           <  2:63987/140‑1 (MQ=255)
                                                                        cccAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTgcg                                                           >  2:309218/1‑140 (MQ=255)
                                                                        cccAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTgcg                                                           <  2:641768/140‑1 (MQ=255)
                                                                          cAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCt                                                         <  1:279522/140‑1 (MQ=255)
                                                                          cAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCt                                                         <  1:287121/140‑1 (MQ=255)
                                                                           aGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCt                                                         >  2:869237/1‑139 (MQ=255)
                                                                           aGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCt                                                         <  1:869237/139‑1 (MQ=255)
                                                                             gggATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAgc                                                      <  2:350008/140‑1 (MQ=255)
                                                                             gggATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAgc                                                      >  1:841160/1‑140 (MQ=255)
                                                                               gATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAgcgc                                                    <  1:507409/140‑1 (MQ=255)
                                                                                  tCAGCCCCTGTAGCCGATGATGAACGTGGTCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAgg                                                 >  2:1173474/1‑140 (MQ=255)
                                                                                  tCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAgg                                                 >  2:553830/1‑140 (MQ=255)
                                                                                             aGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTta                                      <  2:991972/140‑1 (MQ=255)
                                                                                             aGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTta                                      <  2:1121272/140‑1 (MQ=255)
                                                                                             aGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTta                                      <  1:771198/140‑1 (MQ=255)
                                                                                             aGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTta                                      <  1:1145761/140‑1 (MQ=255)
                                                                                                   tgatgaACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTataaata                                <  2:500078/140‑1 (MQ=255)
                                                                                                   tgatgaACGTGGCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTataaata                                >  2:410909/1‑140 (MQ=255)
                                                                                                             ggCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGc                      >  2:779837/1‑140 (MQ=255)
                                                                                                              gCCAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCg                     >  2:144575/1‑140 (MQ=255)
                                                                                                               ccAGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCgg                    >  1:845366/1‑140 (MQ=255)
                                                                                                                 aGCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCgggg                  <  1:1173474/140‑1 (MQ=255)
                                                                                                                  gCCGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGc                 >  2:119812/1‑140 (MQ=255)
                                                                                                                   ccGTTCAATCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCg                >  1:99372/1‑140 (MQ=255)
                                                                                                                         aaTCACCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGTGGTTGTc          <  1:31550/140‑1 (MQ=255)
                                                                                                                             aCCTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACg      <  1:144575/140‑1 (MQ=255)
                                                                                                                              ccTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGa     <  1:779837/140‑1 (MQ=255)
                                                                                                                              ccTCGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGa     <  1:553830/140‑1 (MQ=255)
                                                                                                                                 cGGCGAGGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATgg  >  1:289279/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                     
TTCGCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATGG  >  NC_000913/4233312‑4233580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A