Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F60 I1 R1
|
19 |
68.3 |
2319574 |
99.0% |
2296378 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,651,193 |
A→C |
intergenic (+531/‑98) |
arsC → / → yhiS |
arsenate reductase/putative uncharacterized protein YhiS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,651,193 | 0 | A | C | 98.3%
| 447.9
/ ‑2.6
| 116 | intergenic (+531/‑98) | arsC/yhiS | arsenate reductase/putative uncharacterized protein YhiS |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (51/62); total (53/63) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 |
Only 100 of 116 total aligned reads displayed.
AACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACAT > NC_000913/3651057‑3651327
|
aaCTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGc > 2:321575/1‑140 (MQ=255)
cTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCAt < 2:117014/140‑1 (MQ=255)
cTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCAt < 1:804581/140‑1 (MQ=255)
cTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCAt < 1:899889/140‑1 (MQ=255)
cTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCAt < 2:796775/140‑1 (MQ=255)
cTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCAt < 1:39224/140‑1 (MQ=255)
cTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCAt < 2:151083/140‑1 (MQ=255)
cTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCAt < 2:923616/140‑1 (MQ=255)
ttttAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTa < 1:921403/140‑1 (MQ=255)
ttttAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTa < 1:360502/140‑1 (MQ=255)
tttAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTAc > 2:554414/1‑140 (MQ=255)
tttAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTAc > 2:61637/1‑140 (MQ=255)
tAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACAt > 2:101316/1‑140 (MQ=255)
tGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTAtt < 2:718855/140‑1 (MQ=255)
tGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTAtt < 2:1080473/140‑1 (MQ=255)
gAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCAt > 1:700884/1‑129 (MQ=255)
gAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTa < 1:235369/137‑1 (MQ=255)
gAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTa > 2:235369/1‑137 (MQ=255)
gAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATtg > 2:1023344/1‑140 (MQ=255)
gAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATtg > 1:450940/1‑140 (MQ=255)
gAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATAT‑ACGCAt > 1:3177/1‑128 (MQ=255)
gAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGACATACCGCATTACATTTATtg > 2:1070401/1‑140 (MQ=255)
gcgcATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATtgtg > 2:1134022/1‑140 (MQ=255)
cgcATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATtgtgt > 1:121880/1‑140 (MQ=255)
cgcATTTT‑ATTATTGTTAAAGATTTCCCTTACGATACTATCACTTCCCTTTTTTTTCCCCCAAATAATTCCCGGTTGAGATAAAAGGGAAATCAAAGGTAAATATATCAGGAAGATATACCGCATTACATTTATtgtgtg < 2:670599/140‑1 (MQ=255)
gcATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATtgtgtg < 2:71998/140‑1 (MQ=255)
aTTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTa < 1:922163/140‑1 (MQ=255)
gATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTagaaga < 1:321575/140‑1 (MQ=255)
gATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTagaaga < 2:402229/140‑1 (MQ=255)
gATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGACATACCGCATTACATTTATTGTGTGTagaaga < 1:1070401/140‑1 (MQ=255)
gATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAACTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTagaaga < 2:54034/140‑1 (MQ=255)
ttgttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTAtt < 1:607490/123‑1 (MQ=255)
ttgttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTAtt > 2:607490/1‑123 (MQ=255)
ttgttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATc < 1:101316/140‑1 (MQ=255)
ttgttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATc < 2:278202/140‑1 (MQ=255)
ttgttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATc < 2:916258/140‑1 (MQ=255)
gttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCa > 1:763227/1‑140 (MQ=255)
tAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCAtt < 1:703960/140‑1 (MQ=255)
aaCGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTc < 2:450940/140‑1 (MQ=255)
ccTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTa > 2:921086/1‑140 (MQ=255)
tACGATACTATCACTACCC‑TTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTAt < 1:233398/140‑1 (MQ=255)
aCGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTAt < 2:1046939/140‑1 (MQ=255)
cGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATc < 1:554414/140‑1 (MQ=255)
gATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCAtt > 1:839044/1‑124 (MQ=255)
gATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATcc < 2:290157/140‑1 (MQ=255)
aTACTATCANTANCCTTTTTTTACACACAAATATNACCGGGTGGAGATAANAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCa < 2:243340/140‑1 (MQ=255)
cACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTaaa < 1:421128/140‑1 (MQ=255)
cccTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt < 1:875518/140‑1 (MQ=255)
cccTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt < 1:1131136/140‑1 (MQ=255)
cccTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt < 2:645622/140‑1 (MQ=255)
ttttttACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGc > 2:327409/1‑140 (MQ=255)
tttttACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCa > 2:367051/1‑140 (MQ=255)
tttttACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCa > 1:947556/1‑140 (MQ=255)
tttttACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCa > 1:91150/1‑140 (MQ=255)
ttttACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCAt > 1:405861/1‑140 (MQ=255)
acacacAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATaaaa > 1:414176/1‑140 (MQ=255)
ttACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGaa > 1:44279/1‑140 (MQ=255)
tACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAAt > 1:220783/1‑140 (MQ=255)
tACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAAt > 2:1026058/1‑140 (MQ=255)
tACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAAt > 1:358515/1‑140 (MQ=255)
aCCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATa > 2:466703/1‑140 (MQ=255)
aCCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATa > 2:1139909/1‑140 (MQ=255)
ccGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAAt > 2:381648/1‑138 (MQ=255)
ccGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAAt < 1:381648/138‑1 (MQ=255)
ccGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATaa < 2:763227/140‑1 (MQ=255)
ccGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATaa > 1:1071282/1‑140 (MQ=255)
gggTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAgg > 2:279918/1‑140 (MQ=255)
gggTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAgg > 2:1126657/1‑140 (MQ=255)
gggTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAgg > 2:807077/1‑140 (MQ=255)
gggTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAgg > 1:606791/1‑140 (MQ=255)
gTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGaa > 1:609537/1‑140 (MQ=255)
agaTAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAAtttt > 2:869213/1‑140 (MQ=255)
tAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATg < 2:192417/140‑1 (MQ=255)
aaaaGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGt < 2:609537/140‑1 (MQ=255)
aGGGAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCaa < 2:626699/140‑1 (MQ=255)
gggAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAAt < 2:290894/140‑1 (MQ=255)
gggAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAAt < 2:414176/140‑1 (MQ=255)
gggAAATCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAAt < 2:91150/140‑1 (MQ=255)
tCAAAGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACtt < 1:869213/140‑1 (MQ=255)
aGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAcc < 1:1026058/140‑1 (MQ=255)
aGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAcc < 2:1093870/140‑1 (MQ=255)
aGGTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAcc < 1:1075369/140‑1 (MQ=255)
ggTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAccc > 2:380253/1‑140 (MQ=255)
ggTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAccc > 2:353714/1‑140 (MQ=255)
ggTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAccc > 2:19452/1‑140 (MQ=255)
gTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAcccc < 1:1139909/140‑1 (MQ=255)
gTAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAcccc > 1:379777/1‑140 (MQ=255)
tAATTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCa < 2:132909/140‑1 (MQ=255)
aTTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAgg > 2:1103258/1‑140 (MQ=255)
aTTATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAgg > 1:1106343/1‑140 (MQ=255)
ttATATCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGt < 1:279918/140‑1 (MQ=255)
atatCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGtat < 2:121880/140‑1 (MQ=255)
atatCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGtat < 2:44279/140‑1 (MQ=255)
tCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTataat < 2:947556/140‑1 (MQ=255)
tCAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTataat < 2:1062512/140‑1 (MQ=255)
cAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTataata > 1:567067/1‑140 (MQ=255)
cAGGAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTataata > 1:633148/1‑140 (MQ=255)
ggAAGATATACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATaataaa > 1:568633/1‑140 (MQ=255)
atatACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACat > 1:609798/1‑140 (MQ=255)
atatACCGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACat > 2:71987/1‑140 (MQ=255)
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AACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACAT > NC_000913/3651057‑3651327
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
