Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A21 F60 I1 R1 14 76.3 2570904 99.1% 2547765 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,583,062 (AAAT)3→2 pseudogene (25‑28/390 nt) yrhA → putative uncharacterized protein YrhA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3583054 3583057 4 79 [0] [0] 79 yrhA putative uncharacterized protein YrhA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3583058 =0 (0.000)77 (1.080) 48/260 0.3 100% pseudogene (21/390 nt) yrhA putative uncharacterized protein YrhA
?NC_000913 = 3583053 0 (0.000)pseudogene (16/390 nt) yrhA putative uncharacterized protein YrhA

GATK/CNVnator alignment

N/A