Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A46 F60 I1 R1 16 103.9 3509570 99.0% 3474474 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,244,078 Δ41 bp coding (958‑998/1545 nt) malF ← maltose ABC transporter membrane subunit MalF

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4244078 4244118 41 121 [0] [0] 121 malF maltose ABC transporter membrane subunit MalF

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42440770 (0.000)121 (1.190) 73/272 0.1 100% coding (999/1545 nt) malF maltose ABC transporter membrane subunit MalF
?NC_000913 4244119 = 0 (0.000)coding (957/1545 nt) malF maltose ABC transporter membrane subunit MalF

GATK/CNVnator alignment

N/A