Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A26 F60 I1 R1	21	96.6	3246002	99.1%	3216787	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,808,144	T→G	intergenic (‑46/‑396)	waaQ ← / → waaA	lipopolysaccharide core heptosyltransferase 3/KDO transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,808,144	0	T	G	98.7%	589.0 / ‑3.0	153	intergenic (‑46/‑396)	waaQ/waaA	lipopolysaccharide core heptosyltransferase 3/KDO transferase
Reads supporting (aligned to +/- strand): ref base T (0/2); new base G (76/75); total (76/77)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.81e-01

Only 100 of 156 total aligned reads displayed.

AAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAAT  >  NC_000913/3808008‑3808280

aaaGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCgttt                                                                                                                                       <  2:906177/140‑1 (MQ=255)

 aaGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTtg                                                                                                                                      >  1:425673/1‑140 (MQ=255)

   gcagcaTATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTtgtg                                                                                                                                    >  2:1558563/1‑140 (MQ=255)

   gcagcaTATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTtgtg                                                                                                                                    >  1:1272233/1‑140 (MQ=255)

      gcaTATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGa                                                                                                                                 >  2:1555458/1‑140 (MQ=255)

       caTATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGAt                                                                                                                                >  2:680359/1‑140 (MQ=255)

        atatCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGAtt                                                                                                                               >  2:896005/1‑140 (MQ=255)

         tatCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTg                                                                                                                              >  1:1313425/1‑140 (MQ=255)

         tatCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTg                                                                                                                              <  2:1323916/140‑1 (MQ=255)

          atCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTTCTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGt                                                                                                                             <  1:236041/140‑1 (MQ=255)

          atCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGt                                                                                                                             <  2:1313425/140‑1 (MQ=255)

          atCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGt                                                                                                                             <  1:680359/140‑1 (MQ=255)

                ttttGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGgtt                                                                                                                       <  1:118815/140‑1 (MQ=255)

                   tGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGgttaag                                                                                                                    >  1:457680/1‑140 (MQ=255)

                       tCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGgttaagttaa                                                                                                                >  1:1444382/1‑140 (MQ=255)

                          ggATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCa                                                                                                             <  2:457680/140‑1 (MQ=255)

                             tAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGaa                                                                                                          <  1:1043233/140‑1 (MQ=255)

                                     cTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCAc                                                                                                  >  1:945912/1‑140 (MQ=255)

                                     cTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCAc                                                                                                  >  2:1353563/1‑140 (MQ=255)

                                     cTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCAc                                                                                                  >  2:109328/1‑140 (MQ=255)

                                     cTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCAc                                                                                                  >  2:569399/1‑140 (MQ=255)

                                      ttGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACg                                                                                                 <  1:405665/140‑1 (MQ=255)

                                        gAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAG‑AAAAAGCACGCTa                                                                                              <  2:1541446/140‑1 (MQ=255)

                                         aGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTa                                                                                              <  1:551109/140‑1 (MQ=255)

                                         aGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTa                                                                                              >  1:153717/1‑140 (MQ=255)

                                                 gatgaCAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCa                                                                                      <  2:1444382/140‑1 (MQ=255)

                                                    gaCAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGcccc                                                                                       >  2:1262737/1‑136 (MQ=255)

                                                     aCAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCt                                                                                  <  1:1353563/140‑1 (MQ=255)

                                                         gAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAAc                                                                              >  1:1229367/1‑140 (MQ=255)

                                                         gAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAAc                                                                              >  1:746645/1‑140 (MQ=255)

                                                          agtagtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACa                                                                             <  2:634219/140‑1 (MQ=255)

                                                          agtagtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACa                                                                             >  1:688693/1‑140 (MQ=255)

                                                            tagtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGc                                                                           <  1:676061/140‑1 (MQ=255)

                                                            tagtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTAAACAGc                                                                           <  1:1541623/140‑1 (MQ=255)

                                                              gtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTc                                                                                 <  1:960/132‑1 (MQ=255)

                                                              gtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTc                                                                                 >  2:960/1‑132 (MQ=255)

                                                              gtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGc                                                                           <  2:1486941/138‑1 (MQ=255)

                                                              gtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTa                                                                         >  1:1620866/1‑140 (MQ=255)

                                                               ttAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGGCTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTAc                                                                        >  1:1193990/1‑140 (MQ=255)

                                                               ttAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTAc                                                                        >  1:515867/1‑140 (MQ=255)

                                                               ttAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTAc                                                                        <  1:531885/140‑1 (MQ=255)

                                                               ttAATAACATAGCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTAc                                                                        <  1:1317153/140‑1 (MQ=255)

                                                                taataaCATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTAcc                                                                       <  1:977056/140‑1 (MQ=255)

                                                                taataaCATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTAcc                                                                       <  1:184165/140‑1 (MQ=255)

                                                                      cATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATa                                                                 >  1:149590/1‑140 (MQ=255)

                                                                        tatCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCaa                                                                               <  2:1206220/124‑1 (MQ=255)

                                                                         atCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTg                                                              >  2:957389/1‑140 (MQ=255)

                                                                         atCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTg                                                              >  1:926851/1‑140 (MQ=255)

                                                                         atCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTg                                                              >  2:524054/1‑140 (MQ=255)

                                                                           ccccATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGAt                                                            >  1:1110801/1‑140 (MQ=255)

                                                                           ccccATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGAt                                                            <  2:398653/140‑1 (MQ=255)

                                                                           ccccATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGAt                                                            >  1:383034/1‑140 (MQ=255)

                                                                              cATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAAc                                                         >  2:1049453/1‑140 (MQ=255)

                                                                                tGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGc                                                       >  2:32308/1‑140 (MQ=255)

                                                                                tGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGc                                                       >  2:1358928/1‑140 (MQ=255)

                                                                                 gATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCa                                                      >  2:178547/1‑140 (MQ=255)

                                                                                    atCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCa                                                      >  1:1263422/1‑137 (MQ=255)

                                                                                     tCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCactta                                                  >  2:988198/1‑140 (MQ=255)

                                                                                      cGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTATCTGAATAc                                                                <  2:234330/125‑1 (MQ=255)

                                                                                      cGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTATCTGAATAc                                                                >  1:234330/1‑125 (MQ=255)

                                                                                      cGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCacttac                                                 >  2:1543446/1‑140 (MQ=255)

                                                                                      cGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCacttac                                                 >  1:1467653/1‑140 (MQ=255)

                                                                                      cGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCacttac                                                 >  1:1147789/1‑140 (MQ=255)

                                                                                      cGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCacttac                                                 >  2:676667/1‑140 (MQ=255)

                                                                                        cATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCacttactt                                               >  1:1403214/1‑140 (MQ=255)

                                                                                          tCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTCCCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTg                                             <  1:1489298/140‑1 (MQ=255)

                                                                                          tCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTg                                             <  1:988198/140‑1 (MQ=255)

                                                                                          tCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTg                                             <  2:1110801/140‑1 (MQ=255)

                                                                                          tCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTg                                             <  1:32308/140‑1 (MQ=255)

                                                                                          tCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTg                                             <  2:1272233/140‑1 (MQ=255)

                                                                                           cTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGa                                            >  2:1235145/1‑140 (MQ=255)

                                                                                             ttATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACTCACTTACTTTGACg                                          <  2:425673/140‑1 (MQ=255)

                                                                                             ttATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTg                                             <  1:1434484/137‑1 (MQ=255)

                                                                                             ttATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTg                                             >  2:1434484/1‑137 (MQ=255)

                                                                                             ttATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACg                                          <  2:739732/140‑1 (MQ=255)

                                                                                             ttATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACg                                          <  1:524054/140‑1 (MQ=255)

                                                                                              tATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGt                                         >  2:1082859/1‑140 (MQ=255)

                                                                                               aTGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTg                                        <  2:610379/140‑1 (MQ=255)

                                                                                                tGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGc                                       <  1:1049998/140‑1 (MQ=255)

                                                                                                  aCCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTa                                     <  1:1082859/140‑1 (MQ=255)

                                                                                                  aCCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTa                                     <  2:1467653/140‑1 (MQ=255)

                                                                                                  aCCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTa                                     <  2:1147789/140‑1 (MQ=255)

                                                                                                  aCCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTa                                     <  1:1223381/140‑1 (MQ=255)

                                                                                                   ccAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAg                                    <  2:1403214/140‑1 (MQ=255)

                                                                                                     aGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACATCTACCTGAATACTGATAACGCACTTACTTTGACg                                          >  1:1101074/1‑132 (MQ=255)

                                                                                                     aGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAgtg                                  >  1:691458/1‑140 (MQ=255)

                                                                                                       gATTTTTCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTa                                >  1:1021731/1‑140 (MQ=255)

                                                                                                           tttCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCAt                            <  1:637492/140‑1 (MQ=255)

                                                                                                            ttCGAAATGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCAtt                           >  2:181654/1‑140 (MQ=255)

                                                                                                                 aaTGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCAtttcttt                      >  2:252252/1‑140 (MQ=255)

                                                                                                                 aaTGGCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCAtttcttt                      >  2:1280184/1‑140 (MQ=255)

                                                                                                                     gCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCgca                  <  2:746645/140‑1 (MQ=255)

                                                                                                                     gCTTTTCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCgca                  <  1:1555458/140‑1 (MQ=255)

                                                                                                                          tCCACTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAAt             <  2:688693/140‑1 (MQ=255)

                                                                                                                              cTAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGa         <  2:1021731/140‑1 (MQ=255)

                                                                                                                               tAGCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGAc        <  1:896005/140‑1 (MQ=255)

                                                                                                                                 gCGACTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGAccc      >  2:532725/1‑140 (MQ=255)

                                                                                                                                    aCTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTGGTGTATCATTTCTTTCGCAGCAATCCGACCCGaa   >  2:1540049/1‑140 (MQ=255)

                                                                                                                                    aCTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCgcag                 <  1:448654/126‑1 (MQ=255)

                                                                                                                                    aCTCGTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCgca                  <  1:40565/125‑1 (MQ=255)

AAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAAT  >  NC_000913/3808008‑3808280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A