Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A26 F60 I1 R1	21	96.6	3246002	99.1%	3216787	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,175,413	A→G	noncoding (26/76 nt)	thrU →	tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,175,413	0	A	G	100.0%	404.5 / NA	104	noncoding (26/76 nt)	thrU	tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (57/47); total (57/47)

Only 100 of 105 total aligned reads displayed.

TCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATCCTTCCCC  >  NC_000913/4175276‑4175548

tCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGAc                                                                                                                                       <  2:854861/140‑1 (MQ=255)

 ccGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACt                                                                                                                                      <  2:813171/140‑1 (MQ=255)

 ccGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACt                                                                                                                                      <  2:964308/140‑1 (MQ=255)

 ccGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACt                                                                                                                                      <  2:405252/140‑1 (MQ=255)

  cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTg                                                                                                                                     >  2:1360728/1‑140 (MQ=255)

  cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTg                                                                                                                                     >  2:220864/1‑140 (MQ=255)

    ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACt                                                                                                                                      >  2:359720/1‑137 (MQ=255)

    ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACt                                                                                                                                      <  1:359720/137‑1 (MQ=255)

    ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGAc                                                                                                                                   <  2:920369/140‑1 (MQ=255)

    ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGAc                                                                                                                                   >  1:12450/1‑140 (MQ=255)

    ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGAc                                                                                                                                   <  1:220864/140‑1 (MQ=255)

       ggCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGAc                                                                                                                                   <  1:780121/137‑1 (MQ=255)

       ggCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGAc                                                                                                                                   >  2:780121/1‑137 (MQ=255)

       ggCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTg                                                                                                                                <  2:273439/140‑1 (MQ=255)

            tttCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATc                                                                                                                           <  1:75835/140‑1 (MQ=255)

            tttCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATc                                                                                                                           >  1:239643/1‑140 (MQ=255)

            tttCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATc                                                                                                                           <  1:1040515/140‑1 (MQ=255)

            tttCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATc                                                                                                                           >  2:1040515/1‑140 (MQ=255)

               cttcATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGt                                                                                                                        >  1:48735/1‑140 (MQ=255)

                   aTCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGAc                                                                                                                                   <  1:862567/125‑1 (MQ=255)

                   aTCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGAc                                                                                                                                   >  2:862567/1‑125 (MQ=255)

                     cGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCa                                                                                                                  >  2:543275/1‑140 (MQ=255)

                      gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCAc                                                                                                                 >  2:78278/1‑140 (MQ=255)

                      gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCAc                                                                                                                 >  1:853448/1‑140 (MQ=255)

                      gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCAc                                                                                                                 <  1:1436745/140‑1 (MQ=255)

                      gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCAc                                                                                                                 <  1:1213985/140‑1 (MQ=255)

                      gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCAc                                                                                                                 <  1:1360113/140‑1 (MQ=255)

                          cGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGt                                                                                                             >  2:1243195/1‑140 (MQ=255)

                            cATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTc                                                                                                           <  1:981517/140‑1 (MQ=255)

                              tAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGa                                                                                                         <  1:1360728/140‑1 (MQ=255)

                               aaaaTGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGAt                                                                                                        >  2:594719/1‑140 (MQ=255)

                                       aCCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAg                                                                                                <  2:782668/140‑1 (MQ=255)

                                       aCCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAg                                                                                                >  1:782668/1‑140 (MQ=255)

                                       aCCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCT‑AGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                                                               >  1:419848/1‑140 (MQ=255)

                                        ccAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                                                               >  2:239538/1‑140 (MQ=255)

                                           aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCTACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCgg                                                                                            >  1:1392506/1‑140 (MQ=255)

                                           aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTc                                                                                                      >  2:1550822/1‑130 (MQ=255)

                                           aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTc                                                                                                      <  1:1550822/130‑1 (MQ=255)

                                           aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCgg                                                                                            <  1:594719/140‑1 (MQ=255)

                                           aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCgg                                                                                            <  1:1571437/140‑1 (MQ=255)

                                           aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCgg                                                                                            >  1:908851/1‑140 (MQ=255)

                                            tAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGc                                                                                           >  2:1119071/1‑140 (MQ=255)

                                                    aTTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCaa                                                                                   >  2:436823/1‑140 (MQ=255)

                                                    aTTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCaa                                                                                   >  2:1503045/1‑140 (MQ=255)

                                                      tATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                                                               <  1:1494950/126‑1 (MQ=255)

                                                      tATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                                                               >  2:1494950/1‑126 (MQ=255)

                                                      tATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGt                                                                                 >  1:389869/1‑140 (MQ=255)

                                                        tGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTcc                                                                               >  1:59232/1‑140 (MQ=255)

                                                         gCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCg                                                                              >  1:30963/1‑140 (MQ=255)

                                                         gCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCg                                                                              >  1:1151117/1‑140 (MQ=255)

                                                          cAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCgg                                                                             <  2:48735/140‑1 (MQ=255)

                                                            aTTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTg                                                                           <  1:543275/140‑1 (MQ=255)

                                                            aTTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTg                                                                           <  2:908851/140‑1 (MQ=255)

                                                            aTTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTg                                                                           <  1:1082886/140‑1 (MQ=255)

                                                                  tAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTc                                                                     >  2:845431/1‑140 (MQ=255)

                                                                       gCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                                                                <  2:30963/140‑1 (MQ=255)

                                                                       gCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                                                                <  2:984861/140‑1 (MQ=255)

                                                                       gCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                                                                <  2:1151117/140‑1 (MQ=255)

                                                                       gCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                                                                >  1:25074/1‑140 (MQ=255)

                                                                       gCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                                                                <  1:78278/140‑1 (MQ=255)

                                                                          tGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCgg                                                             <  2:389869/140‑1 (MQ=255)

                                                                             aCTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCa                                                          >  1:970206/1‑140 (MQ=255)

                                                                              cTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCaa                                                         <  2:334800/140‑1 (MQ=255)

                                                                              cTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCaa                                                         <  1:1503045/140‑1 (MQ=255)

                                                                                 gCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAgg                                                      >  1:352981/1‑140 (MQ=255)

                                                                                    tGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAg                                                   <  1:845431/140‑1 (MQ=255)

                                                                                      tctcCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCa                                                 <  2:853448/140‑1 (MQ=255)

                                                                                      tctcCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCa                                                 <  1:1243195/140‑1 (MQ=255)

                                                                                      tctcCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCa                                                 >  2:1272669/1‑140 (MQ=255)

                                                                                      tctcCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCa                                                 <  2:12450/140‑1 (MQ=255)

                                                                                           aTAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTg                                            >  1:204627/1‑140 (MQ=255)

                                                                                               aaTGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTaaa                                        >  1:789488/1‑140 (MQ=255)

                                                                                               aaTGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTaaa                                        >  2:1027898/1‑140 (MQ=255)

                                                                                               aaTGCGCGCTACTTGATGCCGACTTAACTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTaaa                                        >  1:756915/1‑140 (MQ=255)

                                                                                                 tGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATc                                      >  2:524225/1‑140 (MQ=255)

                                                                                                   cgcgcTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTg                                    >  2:63410/1‑140 (MQ=255)

                                                                                                    gtgcTACTTGATGCCGACTTAGCTTAATAGGTCGCGCGACTGACGTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCAGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGc                                   >  2:1200507/3‑140 (MQ=37)

                                                                                                    gcgcTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGc                                   >  2:28188/1‑140 (MQ=255)

                                                                                                    gcgcTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGACCAAAGGGAGCAGACTGTAAATCTGc                                   >  2:63285/1‑140 (MQ=255)

                                                                                                       cTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGt                                >  1:1031059/1‑140 (MQ=255)

                                                                                                       cTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGCAATCAGTATGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTCTAAATCTGCCGt                                >  1:918862/1‑140 (MQ=255)

                                                                                                        tACTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTc                               <  1:1272669/140‑1 (MQ=255)

                                                                                                         aCTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTca                              >  1:1217424/1‑140 (MQ=255)

                                                                                                         aCTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTca                              <  1:239538/140‑1 (MQ=255)

                                                                                                          cTTGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTcac                             <  2:59232/140‑1 (MQ=255)

                                                                                                           ttGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTcaca                            <  1:63410/140‑1 (MQ=255)

                                                                                                           ttGATGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGACCAAAGGGAGCAGACTGTAAATCTGCCGTcaca                            <  1:63285/140‑1 (MQ=255)

                                                                                                               tGCCGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACt                        >  2:942899/1‑140 (MQ=255)

                                                                                                                  cGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTca                              >  2:1619249/1‑131 (MQ=255)

                                                                                                                  cGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCg                     >  2:1017540/1‑140 (MQ=255)

                                                                                                                  cGACTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCg                     >  1:1564479/1‑140 (MQ=255)

                                                                                                                    aCTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAGGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGaa                   >  2:25311/1‑140 (MQ=255)

                                                                                                                     cTTAGCTCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAg                  >  1:414374/1‑140 (MQ=255)

                                                                                                                           tCAGTAGGTAGAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGa            <  2:789488/140‑1 (MQ=255)

                                                                                                                               taggtagAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATcc        >  2:154741/1‑140 (MQ=255)

                                                                                                                                aggtagAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATCCt       >  1:1333828/1‑140 (MQ=255)

                                                                                                                                aggtagAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATCCt       >  1:23980/1‑140 (MQ=255)

                                                                                                                                   tagAGCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATCCTTcc    >  1:941078/1‑140 (MQ=255)

                                                                                                                                     gagCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATCCTTcccc  <  2:770959/140‑1 (MQ=255)

                                                                                                                                      agCGACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGa            <  1:1337800/129‑1 (MQ=255)

TCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATCCTTCCCC  >  NC_000913/4175276‑4175548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A